PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005497m
Common NameCARUB_v10005497mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 269aa    MW: 29172.9 Da    PI: 8.7855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005497mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20150200255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Carubv10005497m 150 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 200
                      8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.58E-32149208No hitNo description
Gene3DG3DSA:3.30.730.101.7E-32149208IPR001471AP2/ERF domain
SMARTSM003806.8E-41150214IPR001471AP2/ERF domain
PfamPF008476.4E-14150200IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-23150210IPR016177DNA-binding domain
PROSITE profilePS5103224.276150208IPR001471AP2/ERF domain
PRINTSPR003675.3E-11151162IPR001471AP2/ERF domain
PRINTSPR003675.3E-11174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSMMAGTQSD YAFLDSIRRH LLGETEMRLS ESITSSVEQS CTTGNSVVKP VYGRNPSFGK  60
LYPCFTESWG DLPLKENDSE DMLVYGILND AFHGGWEPSS SSSDEDRSSF PAVKVESPES  120
FSFGAVDSVP AKKETSPVVP VAAAVAKGKH YRGVRQRPWG KFAAEIRDPA KNGARVWLGT  180
FETAEDAALA YDRAAFRMRG SRALLNFPLR VNSGEPDPVR IKSKRASSSE NGAPKKRRTV  240
AAGDGAVKGL TVKCEMVEVT RGDRLLVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-44146215170ATERF1
3gcc_A2e-44146215170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233239PKKRRTV
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005497m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081030.0AB008103.1 Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding factor 1, complete cds.
GenBankAL1615460.0AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46.
GenBankAY0581740.0AY058174.1 Arabidopsis thaliana AT4g17500/dl4785w mRNA, complete cds.
GenBankAY0625330.0AY062533.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0025780.0BT002578.1 Arabidopsis thaliana Unknown protein (At4g17500) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973430.0Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284323.10.0ethylene-responsive transcription factor 1A
SwissprotO803371e-151EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLR0F6Q20.0R0F6Q2_9BRAS; Uncharacterized protein
STRINGXP_006284323.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-140ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]