PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005463m
Common NameCARUB_v10005463mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 277aa    MW: 31224.7 Da    PI: 6.5079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005463mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-18188221134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  Carubv10005463m 188 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 221
                      *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-846274IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-15182232IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15185245No hitNo description
Gene3DG3DSA:3.30.50.106.7E-14186219IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.952186218IPR000679Zinc finger, GATA-type
CDDcd002022.66E-14187244No hitNo description
PROSITE patternPS003440188213IPR000679Zinc finger, GATA-type
PfamPF003205.2E-16188222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MELWTEARAL KASLRGESTT SLKHHQVIVS EDLSRTSSLP EDFSVECFLD FSEGQLKEEE  60
EEELVSLSSS QEEQEQERDC CIFSSQPCTF DQLPSLPDED VEELEWVSRV VDDCSSPEVS  120
LLFTQTHKTK PSFSSRIPVK PRTKRSRNSL TGGRVWPLVS TNHQQQHAAT EKWRKKKQET  180
AVVFQRRCSH CGTNNTPQWR TGPVGPKTLC NACGVRFKSG RLCPEYRPAD SPTFSNEIHS  240
NLHRKVLELR KSKELGEETG EASTNQTRSN LAASGR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005463m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171630.0AK317163.1 Arabidopsis thaliana AT4G34680 mRNA, complete cds, clone: RAFL21-96-H07.
GenBankY136500.0Y13650.1 Arabidopsis thaliana mRNA for GATA transcription factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284292.20.0LOW QUALITY PROTEIN: GATA transcription factor 3
SwissprotQ8L4M61e-160GATA3_ARATH; GATA transcription factor 3
TrEMBLR0GXZ40.0R0GXZ4_9BRAS; GATA transcription factor
STRINGXP_006284292.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-157GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]