PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10005463m | ||||||||
Common Name | CARUB_v10005463mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 277aa MW: 31224.7 Da PI: 6.5079 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.2 | 2.2e-18 | 188 | 221 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ + Carubv10005463m 188 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 221 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.6E-84 | 6 | 274 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.5E-15 | 182 | 232 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-15 | 185 | 245 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.7E-14 | 186 | 219 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.952 | 186 | 218 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.66E-14 | 187 | 244 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 188 | 213 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.2E-16 | 188 | 222 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MELWTEARAL KASLRGESTT SLKHHQVIVS EDLSRTSSLP EDFSVECFLD FSEGQLKEEE 60 EEELVSLSSS QEEQEQERDC CIFSSQPCTF DQLPSLPDED VEELEWVSRV VDDCSSPEVS 120 LLFTQTHKTK PSFSSRIPVK PRTKRSRNSL TGGRVWPLVS TNHQQQHAAT EKWRKKKQET 180 AVVFQRRCSH CGTNNTPQWR TGPVGPKTLC NACGVRFKSG RLCPEYRPAD SPTFSNEIHS 240 NLHRKVLELR KSKELGEETG EASTNQTRSN LAASGR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10005463m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317163 | 0.0 | AK317163.1 Arabidopsis thaliana AT4G34680 mRNA, complete cds, clone: RAFL21-96-H07. | |||
GenBank | Y13650 | 0.0 | Y13650.1 Arabidopsis thaliana mRNA for GATA transcription factor 3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284292.2 | 0.0 | LOW QUALITY PROTEIN: GATA transcription factor 3 | ||||
Swissprot | Q8L4M6 | 1e-160 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | R0GXZ4 | 0.0 | R0GXZ4_9BRAS; GATA transcription factor | ||||
STRING | XP_006284292.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 1e-157 | GATA transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10005463m |
Entrez Gene | 17877471 |
Publications ? help Back to Top | |||
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