PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005434m
Common NameCARUB_v10005434mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 284aa    MW: 31629.6 Da    PI: 8.737
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005434mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-19135189256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  Carubv10005434m 135 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 189
                      677889***********************************************98 PP
2HD-ZIP_I/II122.81.7e-39135224191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l
  Carubv10005434m 135 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 224
                      69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.5E-28298IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.5E-18116189IPR009057Homeodomain-like
SuperFamilySSF466896.68E-19119192IPR009057Homeodomain-like
PROSITE profilePS5007117.135131191IPR001356Homeobox domain
SMARTSM003891.9E-17133195IPR001356Homeobox domain
PfamPF000461.5E-16135189IPR001356Homeobox domain
CDDcd000863.54E-16135192No hitNo description
PRINTSPR000317.5E-6162171IPR000047Helix-turn-helix motif
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PRINTSPR000317.5E-6171187IPR000047Helix-turn-helix motif
SMARTSM003401.8E-23191234IPR003106Leucine zipper, homeobox-associated
PfamPF021838.1E-8191225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMMGKEDLGL SLSLGFAQSH HPLQLNLKPT SSPVSSNLQM FPWNQTFVSS SDHQKQQFLR  60
KIDVNSLPTT VELEEETGVS SPNSTISSTV SGKRRSDREG TSGGGAGDDL DITLDRSSSR  120
GTSDEEEDYG GETCRKKLRL SKDQSAVLED TFKEHNTLNP KQKLALAKKL GLTARQVEVW  180
FQNRRARTKL KQTEVDCEYL KRCVEKLTEE NRRLEKEAAE LRALKLSPRL YGQMSPPTTL  240
LMCPSCERVA GPSSSNHNQR SVSLSPWLQM AHGSTFDVMR PRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183191RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005434m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412520.0AJ441252.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT1.
GenBankAK2285870.0AK228587.1 Arabidopsis thaliana mRNA for homeobox-leucine zipper protein HAT1, complete cds, clone: RAFL15-36-J21.
GenBankATU093320.0U09332.1 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds.
GenBankAY0873220.0AY087322.1 Arabidopsis thaliana clone 34167 mRNA, complete sequence.
GenBankBT0057560.0BT005756.1 Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
GenBankBT0061120.0BT006112.1 Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284270.10.0homeobox-leucine zipper protein HAT1
SwissprotP466000.0HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLR0H1290.0R0H129_9BRAS; Uncharacterized protein
STRINGXP_006284270.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-176Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]