PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005427m
Common NameCARUB_v10005427mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 286aa    MW: 30859.7 Da    PI: 8.0986
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005427mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18126180256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Carubv10005427m 126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
                      788899***********************************************98 PP
2HD-ZIP_I/II124.83.9e-40126215191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l
  Carubv10005427m 126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 215
                      69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-17117183IPR009057Homeodomain-like
PROSITE profilePS5007117.086122182IPR001356Homeobox domain
SuperFamilySSF466891.5E-18124190IPR009057Homeodomain-like
SMARTSM003893.3E-16124186IPR001356Homeobox domain
CDDcd000861.83E-16126183No hitNo description
PfamPF000467.7E-16126180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PfamPF021831.1E-9182216IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.7E-26182225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSPA SNNYNHAIKK ASATVDHRLI RLDPSLTLSL SGESYKTKTL  60
AGAGDQICRQ TSSHSGISSF SSGRVKRERD VCGGGDGEEE AEETTERVVC SRVSDDHEDE  120
EGVSARKKLR LTKEQSALLE DSFKIHSTLN PKQKQALARQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKLSQP FYMHMPAATL TMCPSCETLG  240
GGGGGGGGAG GGTAAVVDGE TAKGAFSIVT KPRFFNPFTN PSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005427m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU093360.0U09336.1 Arabidopsis thaliana clone HAT22 homeobox protein mRNA, complete cds.
GenBankAY0875630.0AY087563.1 Arabidopsis thaliana clone 36691 mRNA, complete sequence.
GenBankBT0023180.0BT002318.1 Arabidopsis thaliana clone C105403 putative homeobox protein HAT22 (At4g37790) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284261.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-166HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLR0GJU80.0R0GJU8_9BRAS; Uncharacterized protein
STRINGXP_006284261.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-154HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]