PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005248m
Common NameCARUB_v10005248mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 324aa    MW: 34263.4 Da    PI: 7.4496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005248mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11153198555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Carubv10005248m 153 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 198
                      99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-13146202No hitNo description
PROSITE profilePS5088817.301148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9153198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKKKELIKRE AMNSSSLLTP SSSSSPHLQS PATFDHDDFL HHIFSSTPWP SSVLDEAPPP  60
TPDCAGAIPG FHHHDVDSRN QITMIPLSHN HPNDALFNGF SAGSLPFHLP QGSGGQAQTQ  120
SQATASTTTG GTTAPTQTKP KVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNGNK  180
TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAASVSSQIS EDAGGSHENT SSSGENQTTA  240
AAKMTEHQVA KLMEEDMGSA MQYLQGKGLC LMPISLATTI STATCASSRG LPLSPNLSTT  300
TTIANGNGSS LVAVKDAPTV SKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005248m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937110.0AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
GenBankAF4886010.0AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634910.10.0transcription factor bHLH69
SwissprotQ8S3D50.0BH069_ARATH; Transcription factor bHLH69
TrEMBLR0H0Q90.0R0H0Q9_9BRAS; Uncharacterized protein
STRINGXP_006284115.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-144LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]