PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005229m
Common NameCARUB_v10005229mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 329aa    MW: 37119.1 Da    PI: 4.3453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005229mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20110160155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ kl+g
  Carubv10005229m 110 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFATAEEAAIVYDNAAIKLRG 160
                      59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.94E-34110169No hitNo description
PfamPF008474.8E-13111160IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22111168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-30111168IPR001471AP2/ERF domain
PROSITE profilePS5103223.565111168IPR001471AP2/ERF domain
SMARTSM003801.8E-39111174IPR001471AP2/ERF domain
PRINTSPR003671.8E-10112123IPR001471AP2/ERF domain
PRINTSPR003671.8E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMDEYMDFRP VKYTEHKTVI RKYTKKSCAD KTAASGGRRD SARLVRVCLI DRDATDSSSD  60
DEDFLFPRRR VKRLINEIIV EPASSDVSAS SPTKDRERVT ADPPPVQTQK KYRGVRQRPW  120
GKWAAEIRDP EQRRRIWLGT FATAEEAAIV YDNAAIKLRG PAALTNFAVP PEPQPEPEPE  180
SNISVSTSES MDDTQHISSP TSVLNYQTYV SEETINDRVK PVKQEFLEPE QEPISWHLGE  240
GTTTNNNTDD SFPLDIPFLD SYFNESLPDI SIFDQPMSPI QSSENDFFND LVLFDSNTSG  300
ESYSSDIKEI GSMFNDLDDS LLSDLLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21110167159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-21110167462ATERF1
3gcc_A4e-21110167462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005229m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545900.0AC254590.1 Capsella rubella clone CAP23-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282672.10.0ethylene-responsive transcription factor CRF4
SwissprotQ9SUE30.0CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLR0GTD30.0R0GTD3_9BRAS; Uncharacterized protein
STRINGXP_006282672.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-168cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]