PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005217m
Common NameCARUB_v10005217mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 333aa    MW: 37195.9 Da    PI: 8.8422
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005217mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-20163223257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+t+ ql++Le+ F + + +ps++++++++++l    ++ e++V++WFqNrRa+ k+
  Carubv10005217m 163 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQIAEQNVYNWFQNRRARSKR 223
                      89*****************99**************************************97 PP
2Wus_type_Homeobox102.82.3e-33162225265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq
    Carubv10005217m 162 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQ 225
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-16158226IPR009057Homeodomain-like
SuperFamilySSF466895.56E-17159225IPR009057Homeodomain-like
PROSITE profilePS5007114.673159224IPR001356Homeobox domain
SMARTSM003895.8E-14161228IPR001356Homeobox domain
CDDcd000868.49E-12163225No hitNo description
PfamPF000463.8E-18163223IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRQIQKHSIK KSKCPWNMGG GHRPPTISTV QTTPLTLLCF LHSHREKRKK KKEKERNLLS  60
KILTKEMMEW DNQQQPNNHH SSNLQGIDAN GGSGAGGGMY VKVMTDEQYE TLRKQIAIYG  120
TICERLVEMH KTLTAQQDLA GGRLGGLYAD PMMSSIGHKM TARQRWTPTP VQLQILERIF  180
DQGTGTPSKQ KIKDITEELS QHGQIAEQNV YNWFQNRRAR SKRKQHGGGS SGNNNGESEV  240
ETEVEALNEK RVRPETLLGL PDGNSNNNGM GTATTTTTPR PEDLCFQSPE MSSDLHLLGV  300
LSNPRDDHLV GKMGLSESYN LYDHVDDYGM SG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654KRKKKKEKE
24752RKKKKE
34753RKKKKEK
4216224RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005217m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0482680.0AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633784.10.0WUSCHEL-related homeobox 13
SwissprotO817881e-166WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLR0GXF70.0R0GXF7_9BRAS; Uncharacterized protein
STRINGXP_006284087.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-141WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]