PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005203m
Common NameCARUB_v10005203mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 337aa    MW: 38568 Da    PI: 7.5368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005203mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18185235256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  Carubv10005203m 185 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 235
                      59****999.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.87E-34184244No hitNo description
Gene3DG3DSA:3.30.730.108.4E-32185244IPR001471AP2/ERF domain
SMARTSM003806.2E-37185248IPR001471AP2/ERF domain
PROSITE profilePS5103223.67185242IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23185243IPR016177DNA-binding domain
PfamPF008471.9E-13186235IPR001471AP2/ERF domain
PRINTSPR003673.4E-11186197IPR001471AP2/ERF domain
PRINTSPR003673.4E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MCSRPSLFAI TTKTKQYPLF SLALSSPRSF YFFHCSINRV QGTTSEAEMD FDEELNLCIT  60
KGKTVDHSFG EASSTSPRSM KKMKSPNRPK PYSSPPSPYS LGSFPFSFDP TMQNQQQFRS  120
YVPVERQYDP TMQGQKQMIS FSPQQQQQQQ QYMARYWSDT LNLSPRGRMM MMNQEGVQPY  180
SATKLYRGVR QRQWGKWVAE IRKPRSRARL WLGTFDTAEE AAMAYDRQAF KLRGHNATLN  240
FPEHYVNMEN EPHDSNSSPL QKQDETPQPS EVSLESKEVT VTDNVREEGM AEAWYNAVTS  300
GWGPESALWD DLDSSHQFSE SSSSPSSLSC PMRPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21184242160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-21184242463ATERF1
3gcc_A7e-21184242463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005203m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615720.0AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68.
GenBankAY0745740.0AY074574.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ0115790.0DQ011579.1 Arabidopsis thaliana transcription factor QRAP2 (QRAP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282662.20.0ethylene-responsive transcription factor ERF054
SwissprotQ9M0J31e-158ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLR0GTC60.0R0GTC6_9BRAS; Uncharacterized protein
STRINGXP_006282662.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-143ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]