PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005156m
Common NameCARUB_v10005156mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 351aa    MW: 37925.4 Da    PI: 7.8169
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005156mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3950110262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  Carubv10005156m  50 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 110
                      7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-264399IPR003851Zinc finger, Dof-type
PfamPF027013.4E-3351108IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9154108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105692IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPLEEIVT NTCQKPQQQQ LQQPPTAGAA GGERKARPEK DQAVNCPRCN  60
STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNIPVG GGSRKNKRSH SSSISSSSDL  120
GNNHSVSTQP ATKKHLSDHH HHLMSMSQQQ GLTGQNPKFL EATQQDLNLG FPPHGMIRTN  180
FTDLIHNIGN SSSNNKSSNN NNPLLVSSCS AMSTSSLDLI RNSSNNGNSS NSSFMGFPVH  240
NQDPTSGGFS MQDHYKPCNT NTTLLGFSLD HHHNNGFHGG FQGGETGGEG GDDVNGRHLF  300
PFEDLKLPVS SSSASVSVDV NEQQKRESGG DAAATSGGYW TGMLSGGSWC *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005156m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171530.0AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284034.10.0dof zinc finger protein DOF4.6
SwissprotQ8LAP80.0DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLR0F5880.0R0F588_9BRAS; Uncharacterized protein
STRINGXP_006284034.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-139Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]