PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10005148m

Common Name

CARUB_v10005148mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 353aa MW: 40722.4 Da PI: 8.28

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10005148m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.3e-26	223	271	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sledlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Carubv10005148m 223 GLSLEDLSKYFCLTIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 271 589********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.451	206	291	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-21	224	271	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
SWSSSSDMAH SLTSLAVFQS VIRKELVRSL HVYGSVETER EFLFESQSPY VEQEKPEPLF 60 LSEDFRPPED ISEGSVFGTW RCIFLFRFNQ PLPLPRFPTL LCLSRNPKLK DIPNLANDLK 120 FISELTPKTP SDQELCSSVE SREFNQPKPL KRVFKEDSVQ DCEVDQPKPR KIVLKQDLNC 180 LPDSETESES EQESENEITE HSESDAKTEM LRTKRTPSKI VAGLSLEDLS KYFCLTIVEA 240 SRNLNVGLTV LKKKCREFGI PRWPHRKIKS LDSLIHDLQR EAERQQEMSE ATAMAVAKRQ 300 KKLETEKKNI VEKPFMEIQK ETKRFRQINF KKRHRASRAK KNQESLVSSS ST*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

SWSSSSDMAH SLTSLAVFQS VIRKELVRSL HVYGSVETER EFLFESQSPY VEQEKPEPLF  60
LSEDFRPPED ISEGSVFGTW RCIFLFRFNQ PLPLPRFPTL LCLSRNPKLK DIPNLANDLK  120
FISELTPKTP SDQELCSSVE SREFNQPKPL KRVFKEDSVQ DCEVDQPKPR KIVLKQDLNC  180
LPDSETESES EQESENEITE HSESDAKTEM LRTKRTPSKI VAGLSLEDLS KYFCLTIVEA  240
SRNLNVGLTV LKKKCREFGI PRWPHRKIKS LDSLIHDLQR EAERQQEMSE ATAMAVAKRQ  300
KKLETEKKNI VEKPFMEIQK ETKRFRQINF KKRHRASRAK KNQESLVSSS ST*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10005148m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	7e-69	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	7e-69	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	7e-69	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284026.2	0.0	protein RKD5
Swissprot	O81791	1e-172	RKD5_ARATH; Protein RKD5
TrEMBL	R0GJ89	0.0	R0GJ89_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006284026.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-163	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Carubv10005148m
Entrez Gene	17878225

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]