PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10005003m | ||||||||
Common Name | CARUB_v10005003mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 392aa MW: 42540.1 Da PI: 7.7323 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.2 | 1.5e-38 | 51 | 187 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaks 93 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++ +++++s++++ + s + ++ ++ Carubv10005003m 51 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNANFPTDDDDSQNQTLSRSVAaaNSLSK 143 689*************************************************************.44443444444444444344336655566 PP TCP 94 aa.kskksqksaasalnlak.esrakarararertrekmriknk 135 +a +s++++++++s l+l++ e r kar+rarert+++ + +++ Carubv10005003m 144 SAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERDH 187 665778888888889999999***************99988755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-37 | 52 | 184 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.221 | 53 | 111 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.205 | 164 | 185 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MFPKLGDDDE MIGDLMKNNN NGDVVDNNNN GNRLSRWHHN SSRIIRVSRA SGGKDRHSKV 60 LTSKGPRDRR VRLSVSTALQ FYDLQDRLGY DQPSKAVEWL IKAAEDSISE LPSLNNANFP 120 TDDDDSQNQT LSRSVAAANS LSKSACSSNS DTSKNSSGLS LSRSELRDKA RERARERTAK 180 ETKERDHQSH TSFTDLLNSG SDPVNSNRQW MAQAPAPAPS SSPMEYFSSG LILGSGQQTH 240 FPISTNSHPF SSISDHHHHH HPHQEFSFVP EHLISPAGSN GGAFNLDFNM STSSGAGAAV 300 SAVSGGGFSG FNRGTLQSNS TSNHHQSFLA NLHRFPTASE GGGGGGGGPQ FLFGALPAEN 360 HHHHHQHNHQ FQLYYENGCR NSSDHKGKGK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-23 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-23 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10005003m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283886.1 | 0.0 | transcription factor TCP2 | ||||
Swissprot | Q93V43 | 0.0 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | R0GIV6 | 0.0 | R0GIV6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006283886.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7615 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-140 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10005003m |
Entrez Gene | 17880182 |
Publications ? help Back to Top | |||
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