PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004975m
Common NameCARUB_v10004975mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 399aa    MW: 45990.7 Da    PI: 9.0269
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004975mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-1921961090
                     HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                      ++++ l++p  f++eh  gk+ee+k+ +l++ +s r+Wevk+  ++++    lt+GW++Fvka++L+ gD++vFk++g++ f
  Carubv10004975m 21 GFETH-LTIPVVFFSEHiVGKHEEEKKARLRSdSSERTWEVKM--DGRR----LTQGWNDFVKAHDLRIGDVIVFKHEGDMVF 96
                     56666.9***********667778899***996777*******..9998....***********************9998877 PP
2B364.61.5e-201722581198
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      l  + + lpkk a+   ++k ++ +++l +e+g+sW+++l++r + g+y++++GW +F+++n+ kegD+++F l+g+ e  +++ ++ 
  Carubv10004975m 172 LIFDTINLPKKAASFVALNKGCH-KIILVNEEGKSWTLNLRFRESEGSYYMRGGWTRFCRENRQKEGDMITFNLVGDGESIPLLCICP 258
                      4446789******9999999886.****************************************************977768888875 PP
3B3391.4e-12295390499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT.--TT-EEEEEE-SSSEE..E CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkang.LkegDfvvFkldgrsefelv 93 
                      + +++++ k++ ++lp +f++ +g+ ++++ +++led++g +   kl     + ++    l+kGWk F++ n+ Lk+g+ +++kl + ++++++
  Carubv10004975m 295 ISLTAYNIKNSKITLPVEFTRVNGI-TNKHEKIILEDKHGVKRLTKLVRdgpDHRK--RGLGKGWKLFCSVNDvLKVGEPFTLKLLW-ENRTPL 384
                      667899**************88865.56888****************775443333..56************9456***********.88889* PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      +k+++k
  Carubv10004975m 385 LKFCSK 390
                      **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-218111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-238106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.91511104IPR003340B3 DNA binding domain
CDDcd100171.32E-1512101No hitNo description
SMARTSM010192.9E-2314104IPR003340B3 DNA binding domain
PfamPF023621.0E-132496IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-18161249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.071162260IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19162257IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-19162248No hitNo description
SMARTSM010192.5E-21163260IPR003340B3 DNA binding domain
PfamPF023621.2E-18168258IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-13286390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-13289393IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.486292391IPR003340B3 DNA binding domain
SMARTSM010196.2E-17292391IPR003340B3 DNA binding domain
PfamPF023627.0E-12293390IPR003340B3 DNA binding domain
CDDcd100176.16E-11297389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVNSPLQSPK NPHFFQPLLP GFETHLTIPV VFFSEHIVGK HEEEKKARLR SDSSERTWEV  60
KMDGRRLTQG WNDFVKAHDL RIGDVIVFKH EGDMVFSVTP FGPSCCEIQY PQSHIKKEHY  120
NDDDDDDDKD DMENQHTTRE GLRKRNLKPK TEPESFVSYD YSFVANVTAS NLIFDTINLP  180
KKAASFVALN KGCHKIILVN EEGKSWTLNL RFRESEGSYY MRGGWTRFCR ENRQKEGDMI  240
TFNLVGDGES IPLLCICPEE VCSELMSKAK EKKKLVKRRR WEVSPSPGRN SYVTISLTAY  300
NIKNSKITLP VEFTRVNGIT NKHEKIILED KHGVKRLTKL VRDGPDHRKR GLGKGWKLFC  360
SVNDVLKVGE PFTLKLLWEN RTPLLKFCSK VKEEPIYV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004975m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283864.10.0B3 domain-containing protein REM7
TrEMBLR0F4T20.0R0F4T2_9BRAS; Uncharacterized protein
STRINGXP_006283864.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-87B3 family protein