PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10004940m

Common Name

CARUB_v10004940mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 410aa MW: 46769.9 Da PI: 6.9943

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10004940m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.3e-31	263	317	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH++Fv+a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYR++ Carubv10004940m 263 QRRRWSQDLHRKFVDALHKLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMH 317 8****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.3E-17	259	320	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.6E-28	259	320	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.3	259	319	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.2E-25	263	317	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	264	315	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010092	Biological Process	specification of organ identity
GO:0010629	Biological Process	negative regulation of gene expression
GO:0048449	Biological Process	floral organ formation
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0016021	Cellular Component	integral component of membrane
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
ATAHRVLHLL PLIPFFFVSS HPSHFFFFFF TFLSFVYIYV SLSFSLSLSF PFVVSMVQTE 60 TDQRMGLNLN LSIYSLPKPL SQFLDEVSRI KDNHLKLSEI DGYVGRLEEE RKKIDVFKRE 120 LPLCMLLLNE AIGALQEEAR KGSSVMASNG KFNDGEGAKL ETDKKSWMSS AQLWISNPNS 180 QFQSRNEEDD RCVTQNPFQN CNQGGAFLPF NRPPPPPPPP APLSLMTPTS DMMMDCNRIE 240 QNHHHLFNKP SQLQSHHIQK KEQRRRWSQD LHRKFVDALH KLGGPQVATP KQIRDLMKVD 300 GLTNDEVKSH LQKYRMHIRK HPLHPSKTLS SSDQAGVLER ETQSLISLSR SDSPQSPLVA 360 RGLFSSNNGG HSSEEAEEED DEEEEEEKSD GRSCRNESKK KRQVLDLEL*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

ATAHRVLHLL PLIPFFFVSS HPSHFFFFFF TFLSFVYIYV SLSFSLSLSF PFVVSMVQTE  60
TDQRMGLNLN LSIYSLPKPL SQFLDEVSRI KDNHLKLSEI DGYVGRLEEE RKKIDVFKRE  120
LPLCMLLLNE AIGALQEEAR KGSSVMASNG KFNDGEGAKL ETDKKSWMSS AQLWISNPNS  180
QFQSRNEEDD RCVTQNPFQN CNQGGAFLPF NRPPPPPPPP APLSLMTPTS DMMMDCNRIE  240
QNHHHLFNKP SQLQSHHIQK KEQRRRWSQD LHRKFVDALH KLGGPQVATP KQIRDLMKVD  300
GLTNDEVKSH LQKYRMHIRK HPLHPSKTLS SSDQAGVLER ETQSLISLSR SDSPQSPLVA  360
RGLFSSNNGG HSSEEAEEED DEEEEEEKSD GRSCRNESKK KRQVLDLEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00475	DAP	Transfer from AT4G37180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10004940m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT028985	0.0	BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283840.2	0.0	transcription factor HHO5
Swissprot	F4JRB0	0.0	HHO5_ARATH; Transcription factor HHO5
TrEMBL	R0GZX2	0.0	R0GZX2_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006283840.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10004940m
Entrez Gene	17878023

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]