PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004930m
Common NameCARUB_v10004930mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 414aa    MW: 45348.2 Da    PI: 6.6737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004930mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000552733081555
                      HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  Carubv10004930m 273 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 308
                      5556788888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-5268312No hitNo description
SuperFamilySSF474596.15E-10268319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-7273315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLIGHQQ APLPPHMTPN NNNYLRPRMM  60
PTLLPHFLPS PATSSSSSSS PSLPNNPNLS SWLESNDLPP ESWSLSQLLL GGLMMGEEER  120
LEILNHHNQH DEEQQHSFQG KMRLENWEEQ VLSHQQASMV PVDIKQENSI NNNNGYVISS  180
PNSPLNKSCV TTTTTSLNSN DDNNTNNNNN NNSNNMLDFS SNHNGLHLSE GRRTPPDRSS  240
ECNSLDIGGS TNKKPRLQPS PSSQSTLKVR KEKLGGRIAA LHQLVSPFGK TDTASVLSEA  300
IGYIRFLQSQ IEALSHPYFG TTASGNMRHQ QQQHLQGDRS CIFPEDPGQL VNDQCMKRRG  360
ASSSTDTQNA SEEPKKDLRS RGLCLVPISC TLQVGSDNGA DYWAPALGSA GFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004930m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886340.0AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0813160.0AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBankBT0001210.0BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283829.10.0transcription factor bHLH68
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLR0F4Q30.0R0F4Q3_9BRAS; Uncharacterized protein
STRINGXP_006283829.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]