PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004614m
Common NameCARUB_v10004614mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 510aa    MW: 55805.9 Da    PI: 5.3288
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004614mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.6e-39191250261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Carubv10004614m 191 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 250
                      7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-32187248IPR003851Zinc finger, Dof-type
PfamPF027017.4E-32193249IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.612195249IPR003851Zinc finger, Dof-type
PROSITE patternPS013610197233IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
TKQKKLQTTT ETQDSRFSLS SLFSQNKNCN FSFSVFSKSF RFFLAGEEEE EEVKKESFNM  60
ADPAIKLFGK TIPLPELGGV VVDSSCSSSF TGVLLTTEDQ DQNPLRLSDS CTGADEDDDD  120
EDMGGGGESE SDKKEEKDNE CKEGSLKQES NDVTTTSGIT DKTETTKAAK KTNEESSGGT  180
ACSQEAKLKK PDKILPCPRC NSMETKFCYY NNYNVNQPRH FCKKCQRYWT AGGTMRNVPV  240
GAGRRKNKSP ASHYNRHVSI TSGEGMQKAV RSDLQHPNGA NLLTFGSDSV LCESMASGLN  300
LAEKSMLKTQ TVLQEPNEGL KITVPLNPSN EEAGTVISPL PKVPCFPGPP TWPYAWNGVS  360
WTVLPFYPPP AYWSCPGVSP GAWNNFTWMP QPNSPSSSGP NSPTLGKHSR DESAAEPGTA  420
FEETESLGRE KSKPERCLWV PKTLRVDDPE EAAKSSIWET LGIKKDENAD TFGAFRSSTK  480
EKSSLPGRRP ELQANPAALS RSTNFHETS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004614m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0157910.0BT015791.1 Arabidopsis thaliana At5g39660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283563.20.0cyclic dof factor 2
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLR0F4Y80.0R0F4Y8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006283563.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]