PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004602m
Common NameCARUB_v10004602mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 516aa    MW: 57093 Da    PI: 7.1961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004602mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1133.2e-35662141128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                      lp+G++F+Ptd+el+ e+L++kv +k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+      
  Carubv10004602m  66 LPAGVKFDPTDQELI-EHLEAKVLAKDfkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecd 154
                      799************.99********95554442...143333666646**********.555666799******************8799999 PP

              NAM  78 ........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Carubv10004602m 155 nnlqgsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 214
                      9999987766788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3862233IPR003441NAC domain
PROSITE profilePS5100533.0166233IPR003441NAC domain
PfamPF023658.8E-1667214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
THIRIGENRV REIRERSCEM NKSNPAGSVT GSDIIDAKIE EHQLCGSKKC PSCGHKLEGK  60
PDWVGLPAGV KFDPTDQELI EHLEAKVLAK DFKSHPLIDE FIPTIEGEDG ICYTHPEKLP  120
GVTRDGLSRH FFHRPSKAYT TGTRKRRKIQ TECDNNLQGS SSSGETRWHK TGKTRPVMVN  180
GKQKGCKKIL VLYTNFGKNR KPEKTNWVMH QYHLGTHEEE KEGELVVSKI FYQTQPRQCN  240
WSSSTSSLNA LGGGGGEASS GGEYHMRRDS GTTSGGSCSS SREIINVNPS SRSDEVGGIG  300
GGVMAVAAAA VAAGLPSYAM DQLSFVPFMK SFDEVARRET PHTGQAICEG VMAEQHSHRH  360
HRHQGSSSTS HHIAHDHHNH HQQQQHQQRH HAFNISQPTH PISTIISPSS SLHHASINIL  420
DDNPYHVHRI LLPNENYQTQ QQQRQEGEEE HNDGKMGGRS ASGLEELIMG CTSSTTHHDV  480
KDGSSSMGNQ QEAEWLKYST FWPAPDSSDN QDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004602m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546020.0AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283549.20.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLR0F4040.0R0F404_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006283549.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]