PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004314m
Common NameCARUB_v10004235mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 664aa    MW: 72680.2 Da    PI: 7.4077
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004314mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094514881954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Carubv10004314m 451 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 488
                      664559******************************88 PP
2BELL121.53.5e-39309380172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g g+a pYt+lA+ka+SrhFrcLkda+a q+
  Carubv10004314m 309 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGQGAALPYTALAQKAMSRHFRCLKDAVAAQL 380
                      589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-76239378IPR006563POX domain
PfamPF075263.5E-49244377IPR006563POX domain
PROSITE profilePS5007112.568429492IPR001356Homeobox domain
SMARTSM003891.2E-9432496IPR001356Homeobox domain
CDDcd000861.68E-12432493No hitNo description
SuperFamilySSF466892.91E-17433499IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29435498IPR009057Homeodomain-like
PfamPF059203.3E-18449488IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MDEESSVAGG GIPVYETAGM LSEMFNFPGG SRGGRDLDHG QSFRSNRQLL EEQHQNIPAL  60
NDSATATAAA MQLFLMNPPP PHQQQPPSPS STSTTRSHHN SSTLHMLLPN PSTNTTHHQS  120
YDNNMSMHQQ LPHHHNHQQL TWQSSSSDHH HNSQTEIGTI HVENSGGQGL SLSLSSSLEA  180
AAKAEEYRNI YYGANPSNAS PHHQYNQFKT LLANSSQHHQ VLNQFRPSPT VAAASSSSIG  240
AVNILRHSRY TTSAQELLEE FCSVGRGFLK KNKQKNNSNP NASGGDGGGG SSPSSAGAIK  300
DHPTLSASDR IEHQRRKVKL LTMLEEVDRR YNHYCEQMQM VVNSFDIVMG QGAALPYTAL  360
AQKAMSRHFR CLKDAVAAQL KQSCELLGDK DGAGMSSSGL TKGETPRLRL LEQSLRQQRA  420
FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN  480
WFINARVRLW KPMVEEMYQQ ESKERERERE RDQETKNSNN DKSTKPNDNN ESNFTAARTT  540
SSQTPITTAP DAAAVATGHR LRSDINAYEN DPSSPLLPSS YSNAAAASAD LGSRYGGGSA  600
AFSAVATCQQ GVGGFVDADM AGVSVIRFGT NPTGDVSLTL GLRHAGNMPD KDPSFCVRDF  660
GGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16438496563Homeobox protein Meis2
3k2a_B1e-16438496563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004314m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634772.10.0BEL1-like homeodomain protein 2 isoform X1
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLR0GH260.0R0GH26_9BRAS; Uncharacterized protein
STRINGXP_006283201.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]