PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10004222m | ||||||||
Common Name | CARUB_v10004139mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ARF | ||||||||
Protein Properties | Length: 743aa MW: 82756.7 Da PI: 6.2588 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.7e-23 | 44 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ Carubv10004222m 44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldyTLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--RNE 134 99*****************************9666655.49************************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ Carubv10004222m 135 KNQLFLGIRRA 145 8889***9997 PP | |||||||
2 | Auxin_resp | 110.2 | 2.1e-36 | 170 | 253 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +t+s F+v+++Pras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Carubv10004222m 170 AAHASATNSCFTVFFHPRASPSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVK 253 799******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.89E-48 | 30 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-40 | 37 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.04E-21 | 43 | 139 | No hit | No description |
PROSITE profile | PS50863 | 12.308 | 44 | 146 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-23 | 44 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-21 | 44 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.9E-32 | 170 | 253 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.01E-7 | 630 | 710 | No hit | No description |
Pfam | PF02309 | 7.5E-8 | 633 | 721 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.8 | 636 | 720 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MHADVETDEV YAQMTLQPLT PEEQKETFVP IELGIPSKQP SNYFCKTLTA SDTSTHGGFS 60 VPRRAAEKVF PPLDYTLQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK 120 RLVAGDSVIF IRNEKNQLFL GIRRATRPQT IVPSSVLSSD SMHIGLLAAA AHASATNSCF 180 TVFFHPRASP SEFVIQLSKY IKAVFHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD 240 TVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHAGTSS 300 LPDGRGELGS GLTWLRGGGG DQQGLLPLNY PSVGLFPWMQ QRLDLTQMGT DNNQQYQAML 360 AAGLQNIGGG DPLRQQFVQL QEPHHQYVQQ SASHNSDLML QQQQQQQQQQ ASRHAMHAQT 420 QVMSENIPQQ NMRQEVSNHP TGQQLQQPDQ NAYLNAFKMQ NGHLQQWQHQ EMASPSFMKS 480 DFTDSSNKFA TSATPMQQNA ASPASNDGSN LLNFSITGQS VLPEQLTTEG WSPKASNTFS 540 EPLSLPQAYP GKSLALEPGN PNLNPQNPSL FGVDPDSGLF LPSTVPRFAS SSGDAEASPM 600 SLTDSGFQNS LYGCMQDTTH ELLHGAGQIN PSNQTKNFVK VYKSGSVGRS LDISRFSSYH 660 ELREELGKMF AIEGLLEDPL RSGWQLVFVD KENDILLLGD DPWESFVNNV WYIKILSPED 720 VQQMGDQGEG SAGSFPQNPT HL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-119 | 1 | 274 | 115 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10004222m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF042196 | 0.0 | AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282446.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | R0GVY9 | 0.0 | R0GVY9_9BRAS; Auxin response factor | ||||
STRING | XP_006282446.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10004222m |
Entrez Gene | 17880409 |