PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004192m
Common NameCARUB_v10004192mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 777aa    MW: 87081 Da    PI: 7.9613
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004192mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.2e-16358457198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+l+ sd+++ grlv+pkk+ae++  +++++e++ l+++d+ g++W++++++  +++s+ yvl+ G +   ++  L++gD+v+F++ +  e+
  Carubv10004192m 358 FEKILSASDTGRVGRLVVPKKCAEAFfpQISHPEGVPLKIQDPMGKEWTFQFRFwpNNNSRIYVLE-GVNPCIQSLVLQTGDTVIFSRLD-PER 449
                      99**************************8889999*****************99666666669999.********************665.566 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +l +++++
  Carubv10004192m 450 KLILGFRK 457
                      66666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-27347467IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-20356457No hitNo description
SuperFamilySSF1019361.31E-18356457IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-18358459IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715358459IPR003340B3 DNA binding domain
PfamPF023621.3E-13358457IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
ANNTTQYPPR PGAPLHYFSL CSPINFTHAF LGFFVMFSSS SMSSSSSSFS SRFCFNHECF  60
EFKLDHCRPG WRLRTGDFVD LCDRCASLYE QGKFCDVFHQ KASGWRCCES CGKRIHCGCI  120
VSASTYMLLD AGGIECLACA RKKVALGPNF PPSPSFLFQS PISEKFKDLS INWSSSTRSN  180
QISFQPPSCL GPSVLQFDLR NRGDNNEFSQ PTSKERATAC SMEKKRGINN LIGKLMSENM  240
QKYKVSPFPN GPNINVYHPC GTQLAFPVPI TTPIEKTGHS RLSGSHLWQT PNCSPLSHLH  300
YDLNGGADSL LESKSRNVRT QLDAPGKYQV VPQYWPKVSN KNQQNQSKES ESIVTHLFEK  360
ILSASDTGRV GRLVVPKKCA EAFFPQISHP EGVPLKIQDP MGKEWTFQFR FWPNNNSRIY  420
VLEGVNPCIQ SLVLQTGDTV IFSRLDPERK LILGFRKAAI AQSTDQETNS TNNNRDTCTN  480
KDAEPADMHS LSEVKKSTYI TKETPGVEFS SGKKNSSMMI TRGKRQKVEK GDHIELRLTW  540
EEAQGFLLPP PNLTPSKVVI DDYEFEEYED APIIGKPIDD TGSTCTPDQK LVAQQQNEEA  600
MEEAERLLMS PKTTTKHPRH RNGCSCIVCI QSPSGAGPKH DRRCSCAVCE AVKRRRHSLL  660
LRREKKQMGK EDNAHKELEQ PNSDDELHQS ANNSENHECH TSPLKVQLDL NFKPEKDGES  720
LPDYNKTTKK KTLHHDDTVK SSFNSPSSST AHSQINREEE ELKKNTEIAD TTTSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-513364611126B3 domain-containing transcription repressor VAL1
5yzz_C2e-513364611126B3 domain-containing transcription repressor VAL1
5z00_C2e-513364611126B3 domain-containing transcription repressor VAL1
5z00_G2e-513364611126B3 domain-containing transcription repressor VAL1
5z00_K2e-513364611126B3 domain-containing transcription repressor VAL1
5z00_M2e-513364611126B3 domain-containing transcription repressor VAL1
6j9a_A2e-513364612127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004192m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226031e-138AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615551e-138AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026871e-138CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283162.20.0B3 domain-containing transcription factor VAL3 isoform X1
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLR0GUV90.0R0GUV9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006283162.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3