PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10004076m

Common Name

CARUB_v10004076mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 960aa MW: 105622 Da PI: 5.7443

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10004076m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	590	640	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Carubv10004076m 590 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 640 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.63E-5	213	284	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.757	579	660	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-26	592	640	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-23	860	948	No hit	No description
SMART	SM00666	2.4E-28	863	945	IPR000270	PB1 domain
PROSITE profile	PS51745	27.793	863	945	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.0E-27	863	945	No hit	No description
Pfam	PF00564	3.1E-20	863	944	IPR000270	PB1 domain
CDD	cd06407	4.18E-34	864	944	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MCEPDDNSAR NGVAPPPSRS RELLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPIFVSSSS 60 EQPCSPLWAF SDGGGNGNHH HANAGADDDK ISSASVVPSF RLADYPLFLP YSSPSAAENT 120 TEKHNNFQFP SPLMSLVPPE NTDNYCVIKE RMTQALRYFK DSTEQHVLAQ VWAPVRKNGR 180 DLLTTLGQPF VLNPNGNGLN QYRMISLTYM FSVDSESDIE LGLPGRVFRQ KLPEWTPNVQ 240 YYSSKEFSRL DHALHYNVRG TLALPVFNPS GQSCIGVVEL IMTSEKIHYA PEVDKVCKAL 300 EAVNLKSSEI LDHQTTQICN ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN 360 GGGLKKNCTS FDGSCMGQIC MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN 420 GGSCFCRDIT KFCKTQYPLV HYALMFKLTT CFAISLQSSY TGDDSYILEF FLPSSITDDQ 480 EQDSLLGSIL VTMKEHFQSL RVASGVDFGE DDDKLSFEII QALPDTKIHS KIESIRVPFS 540 GFKSNATETR VIPQPVVQSS DPVNENGNVA TVNGVVKEKK KTEKKRGKTE KTISLDVLQQ 600 YFTGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKIKKV NRSITKLKRV IESVQGTDGG 660 LDLTSMAVSS IPWTHGQPSA QPLNSPSGSK PPELPNANNS PNHWSSDHSP HEPNCSPELP 720 SNGHKRSRTV DESAGTPTSH GSCDGNQLDE TKVPNQDPLF TVGESPGLLF PPYARDHDVS 780 AASFSMPNRL LGSIDHFRGM LIEDAGSSKD LRNLCSTAAF DDKFPDSNWM NNDNNSNNNI 840 YAPPKEEAIA NVTRGASGSE TRTITIKASY KEDIIRFRIS SGSGIMELKD EVAKRLKLDA 900 GTFDIKYLDD DNEWVLIACD ADLQECLEIP RSSRTNIVRL LVHDVTTNLG SSCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MCEPDDNSAR NGVAPPPSRS RELLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPIFVSSSS  60
EQPCSPLWAF SDGGGNGNHH HANAGADDDK ISSASVVPSF RLADYPLFLP YSSPSAAENT  120
TEKHNNFQFP SPLMSLVPPE NTDNYCVIKE RMTQALRYFK DSTEQHVLAQ VWAPVRKNGR  180
DLLTTLGQPF VLNPNGNGLN QYRMISLTYM FSVDSESDIE LGLPGRVFRQ KLPEWTPNVQ  240
YYSSKEFSRL DHALHYNVRG TLALPVFNPS GQSCIGVVEL IMTSEKIHYA PEVDKVCKAL  300
EAVNLKSSEI LDHQTTQICN ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN  360
GGGLKKNCTS FDGSCMGQIC MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN  420
GGSCFCRDIT KFCKTQYPLV HYALMFKLTT CFAISLQSSY TGDDSYILEF FLPSSITDDQ  480
EQDSLLGSIL VTMKEHFQSL RVASGVDFGE DDDKLSFEII QALPDTKIHS KIESIRVPFS  540
GFKSNATETR VIPQPVVQSS DPVNENGNVA TVNGVVKEKK KTEKKRGKTE KTISLDVLQQ  600
YFTGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKIKKV NRSITKLKRV IESVQGTDGG  660
LDLTSMAVSS IPWTHGQPSA QPLNSPSGSK PPELPNANNS PNHWSSDHSP HEPNCSPELP  720
SNGHKRSRTV DESAGTPTSH GSCDGNQLDE TKVPNQDPLF TVGESPGLLF PPYARDHDVS  780
AASFSMPNRL LGSIDHFRGM LIEDAGSSKD LRNLCSTAAF DDKFPDSNWM NNDNNSNNNI  840
YAPPKEEAIA NVTRGASGSE TRTITIKASY KEDIIRFRIS SGSGIMELKD EVAKRLKLDA  900
GTFDIKYLDD DNEWVLIACD ADLQECLEIP RSSRTNIVRL LVHDVTTNLG SSCESTGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10004076m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282537.1	0.0	protein NLP7
Refseq	XP_023634148.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	R0GSX5	0.0	R0GSX5_9BRAS; Uncharacterized protein
STRING	XP_006282537.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Carubv10004076m
Entrez Gene	17881043

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]