PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10004070m

Common Name

CARUB_v10004068mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 973aa MW: 108408 Da PI: 6.256

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10004070m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	649	699	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Carubv10004070m 649 EKTIGLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 699 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	638	719	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-24	652	699	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-24	862	957	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-25	869	953	No hit	No description
PROSITE profile	PS51745	29.794	871	954	IPR000270	PB1 domain
SMART	SM00666	1.8E-28	871	954	IPR000270	PB1 domain
Pfam	PF00564	3.3E-18	873	953	IPR000270	PB1 domain
CDD	cd06407	1.27E-41	873	953	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MEGGGGDGSF LPNSSFGAFS ETAMDMDFME ELFYDGCWLE TTDGKSLKQT MGQQVSDSTT 60 MNDNNNNNSF LYGYQFAGNT SQDHISNEET GKKFPPIAPG FLKIEDLSNQ PMNQAPFDQS 120 AAMSSAQAEK FLLEETEGGR RYWIAPRTSQ GPSSSVKDRL VQAIKGLDEA VQDKDFLIQI 180 WVPIQQEGKN FLTTLEQPHF FNPKYSSLKR YRDVSVAYNF PADEDSTESV GLPGRVFLRK 240 LPEWTPDVRF FRSEEYPRIK EAEKCDVRGS LALPVFERGS GTCLGVVEIV TTTQKMNYRP 300 ELDNICKALE SVNLRSSRNL KSPSREFLQV YNEFYYAALP EVSEFLTWVC RLYDLPLALT 360 WAPCARQGKV GSRHSDENFS ECVSTVDDAC IVPDHQSRNF LEACSEHHLL QGEGIVGKAF 420 KATKLFFVPE VITFSKTNYP LAHHAKISGL HAALAVPLKS KFNGSVEFVL EFFFPKTCLH 480 TEAQQDMLKS LSVTLQQDFR SLNLVIDKEL ELEVVFPVRE EVVFAETPLI NAQTGENMKP 540 LPLEEISQED SSWISHMIKA NEKGKGVSLS WEYQKEEPKE EFMLTSGWDN NQIGSGHNNF 600 LSEAEQFQKV SNSGLRIDMD PSFESASFGV GQTLLGSRRP GEKRRTKTEK TIGLQVLRQY 660 FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKIKKVG HSLKKLQLVI DSVQGVQGSI 720 QLDSFYTSFP ELSSPHMSGT GTSFKNTDQS RNLTAQTENG VSAQVTTAAP RSPPSSSCSH 780 SSGSSTCCST GANQSTNTGN TSNTVTTLMA ENASAILKRA RSEVRLHTMN QEETKSLSRT 840 LSHKTFSEHP LFENLPRLPE SSTRKLKAEG ASKVKATFGE AKVRFTLLPT WGFRELQHEI 900 ARRFNIDNIA PFDLKYLDDD KEWVLLTCEA DLEECIDIYR SSQSRTIKIS VHEASQGKMG 960 GSFGSIALGP SL*

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MEGGGGDGSF LPNSSFGAFS ETAMDMDFME ELFYDGCWLE TTDGKSLKQT MGQQVSDSTT  60
MNDNNNNNSF LYGYQFAGNT SQDHISNEET GKKFPPIAPG FLKIEDLSNQ PMNQAPFDQS  120
AAMSSAQAEK FLLEETEGGR RYWIAPRTSQ GPSSSVKDRL VQAIKGLDEA VQDKDFLIQI  180
WVPIQQEGKN FLTTLEQPHF FNPKYSSLKR YRDVSVAYNF PADEDSTESV GLPGRVFLRK  240
LPEWTPDVRF FRSEEYPRIK EAEKCDVRGS LALPVFERGS GTCLGVVEIV TTTQKMNYRP  300
ELDNICKALE SVNLRSSRNL KSPSREFLQV YNEFYYAALP EVSEFLTWVC RLYDLPLALT  360
WAPCARQGKV GSRHSDENFS ECVSTVDDAC IVPDHQSRNF LEACSEHHLL QGEGIVGKAF  420
KATKLFFVPE VITFSKTNYP LAHHAKISGL HAALAVPLKS KFNGSVEFVL EFFFPKTCLH  480
TEAQQDMLKS LSVTLQQDFR SLNLVIDKEL ELEVVFPVRE EVVFAETPLI NAQTGENMKP  540
LPLEEISQED SSWISHMIKA NEKGKGVSLS WEYQKEEPKE EFMLTSGWDN NQIGSGHNNF  600
LSEAEQFQKV SNSGLRIDMD PSFESASFGV GQTLLGSRRP GEKRRTKTEK TIGLQVLRQY  660
FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKIKKVG HSLKKLQLVI DSVQGVQGSI  720
QLDSFYTSFP ELSSPHMSGT GTSFKNTDQS RNLTAQTENG VSAQVTTAAP RSPPSSSCSH  780
SSGSSTCCST GANQSTNTGN TSNTVTTLMA ENASAILKRA RSEVRLHTMN QEETKSLSRT  840
LSHKTFSEHP LFENLPRLPE SSTRKLKAEG ASKVKATFGE AKVRFTLLPT WGFRELQHEI  900
ARRFNIDNIA PFDLKYLDDD KEWVLLTCEA DLEECIDIYR SSQSRTIKIS VHEASQGKMG  960
GSFGSIALGP SL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10004070m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283076.1	0.0	protein NLP2
Refseq	XP_006283077.1	0.0	protein NLP2
Refseq	XP_023634877.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	R0GGQ7	0.0	R0GGQ7_9BRAS; Uncharacterized protein
STRING	XP_006283075.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10004070m
Entrez Gene	17879660