PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004030m
Common NameCARUB_v10004029mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-other
Protein Properties Length: 1114aa    MW: 126373 Da    PI: 8.2814
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004030mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.32.6e-13553856
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++eq+++Le+++ +++yp+ +e+e+L k+lgLt + V+ WF+ rR + k
  Carubv10004030m  5 SPEQVQALEAFYLEKMYPTSREMEDLGKSLGLTVKEVSGWFKRRRSRGK 53
                     89********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.297155IPR001356Homeobox domain
SMARTSM003894.6E-9159IPR001356Homeobox domain
SuperFamilySSF466897.27E-11354IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-12354IPR009057Homeodomain-like
CDDcd000861.91E-11351No hitNo description
PfamPF000467.6E-11553IPR001356Homeobox domain
PROSITE profilePS5082712.536351410IPR018501DDT domain
SMARTSM005711.1E-10351410IPR018501DDT domain
PfamPF027916.0E-9354405IPR018501DDT domain
PfamPF156124.2E-9629669IPR028942WHIM1 domain
PfamPF156137.0E-11750823IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MKRKSPEQVQ ALEAFYLEKM YPTSREMEDL GKSLGLTVKE VSGWFKRRRS RGKGVKSLAD  60
NGVGTENPQS YNPSRIRSST SSRCDLIAGV EKRCNVGIKK ANCQGLLTSQ HILAKIFRKD  120
GPSLGSEFDH LPSGARKASW LGTSSVDQQK QRMARKRKIS ELMDHTRPDC IREKTVKKHG  180
IGKGLMTVWR VMNPNRRNVS PCVDLLDARA TLPQSSARKP PHRKKKQKQL ASILKQKLLQ  240
KRSTEKKRCS INREVTLNKD ETQKAFKENC ELAADREVFK ETCQTISILM DDEELEMRER  300
QERGNPLTCS CHHPSSGPRG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PEPVKKLFKV  360
VHFLYTYSVT LDICPFTLDE FTRAFHDKDS FLLGKIHLSL LKLLLLDVET ELQRGSFSNL  420
NISCKFLALL QSVESQILIL DMWKDLLNSL TWTEILRQIL VAAGYGTLKC AVQSEELSKE  480
RRLMKKYGLR LGTLKGELFR MLNEQGNNGL EISELANAPE VAVLNLATAQ EERENSICST  540
LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDVSGSV DDEDCSSSSG DEVERVSENP  600
ALRKVKYRKR QRHKSKMREV YSEIDESHPG EPWLLGLMEG EYSDLSIEEK LDVLVALIDL  660
LSSGSTIRME DIPRAMVDCA PSIYSHGSGG KIKRSSFNQY RRGSWVHGGE LHGTQALTKS  720
SDSHPVDSSS IVGAFAKLAG EKANNVHPMQ SVYLGSDRRF NRYWLFLGPC SLNDPGHRCV  780
FFESSEDGHW EVLDNKEALR ALLSVLDDRG RREARLIESL EKRESFLCQA MLSRQMAQSE  840
TAHFTDIVRE DSSSPVSDID NNLCPSEIAN DQVSSQHAAI VFEIGSKREK SLLWSLLQEF  900
DEWIWADFNF NLNAVKHRRR SYLDSLTRCK SCHDLYWRDE KHCKICHTTF EVDIDLEERY  960
AIHAATCRRK EECDAFPDHK ILSSQLQSLK AAVYAIESAM PEDALIGAWR KSAHRLWAKR  1020
LRRSSTVSEI TQVIGDFVGA INEDWLWHSS DQAHSLLGET ISCFPSMPQT TSAMALWLVK  1080
LDTLIAPFVE KAHPERNQLF CRTRNTSRRA STT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004030m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496400.0AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615340.0AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283037.10.0homeobox-DDT domain protein RLT3 isoform X2
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLR0GUF40.0R0GUF4_9BRAS; Uncharacterized protein
STRINGXP_006283038.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator