PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003825m | ||||||||
Common Name | CARUB_v10003825mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 165aa MW: 19393.4 Da PI: 8.6404 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 73.9 | 2.2e-23 | 15 | 68 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr++Wt + H Fv++ve LGG+e A Pk+il+lm+ + +tl++vkSHLQ+YR Carubv10003825m 15 PRMQWTDDRHYLFVQVVEILGGEELAKPKKILNLMGANNITLSQVKSHLQMYRN 68 8****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 11 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.599 | 11 | 71 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.6E-21 | 15 | 70 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.33E-15 | 15 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-7 | 16 | 67 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MRDSIVRSYI RSNMPRMQWT DDRHYLFVQV VEILGGEELA KPKKILNLMG ANNITLSQVK 60 SHLQMYRNKK KEKAKQEMRM MWQMYHRQSQ QYVQIYENLI RDVVQIEERF FPEMVNPMVV 120 SCKSLYQSCR VGLNENRGHD VVVAEDGANG EEDMSLELTL GLKY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003825m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023635980.1 | 1e-115 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0HDE7 | 1e-119 | R0HDE7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290157.1 | 1e-120 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 1e-53 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003825m |
Entrez Gene | 17881304 |