PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003825m
Common NameCARUB_v10003825mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 165aa    MW: 19393.4 Da    PI: 8.6404
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003825mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.92.2e-231568255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     pr++Wt + H  Fv++ve LGG+e A Pk+il+lm+ + +tl++vkSHLQ+YR 
  Carubv10003825m 15 PRMQWTDDRHYLFVQVVEILGGEELAKPKKILNLMGANNITLSQVKSHLQMYRN 68
                     8****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-221170IPR009057Homeodomain-like
PROSITE profilePS512949.5991171IPR017930Myb domain
TIGRFAMsTIGR015572.6E-211570IPR006447Myb domain, plants
SuperFamilySSF466893.33E-151571IPR009057Homeodomain-like
PfamPF002495.2E-71667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRDSIVRSYI RSNMPRMQWT DDRHYLFVQV VEILGGEELA KPKKILNLMG ANNITLSQVK  60
SHLQMYRNKK KEKAKQEMRM MWQMYHRQSQ QYVQIYENLI RDVVQIEERF FPEMVNPMVV  120
SCKSLYQSCR VGLNENRGHD VVVAEDGANG EEDMSLELTL GLKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003825m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635980.11e-115putative Myb family transcription factor At1g14600
TrEMBLR0HDE71e-119R0HDE7_9BRAS; Uncharacterized protein
STRINGXP_006290157.11e-120(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.11e-53G2-like family protein