PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003820m | ||||||||
Common Name | CARUB_v10003820mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 22355.8 Da PI: 9.8293 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F+++ L H++ H Carubv10003820m 57 FKCHYCFRNFPTSQALGGHQNAH 79 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-4 | 52 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.53E-7 | 52 | 84 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKRTHDFMNV NSFSPKERPI RLFGFEFGAS HEESEPKDSN CNENSESVKD NTKEKRFKCH 60 YCFRNFPTSQ ALGGHQNAHK RERQQTKRFN LHSNAAALFH RHQAHSRLSE EHFSVEAAHI 120 NDARLGLLRM YNSSARFNRD GTLSYNKYMP LFIDDNQITR PTTYVGGSSS RRSLFYESKT 180 NVPDHVSLDL RL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to ZFP8. {ECO:0000269|PubMed:17507408}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003820m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:17507408}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290152.1 | 1e-142 | zinc finger protein GIS2 | ||||
Swissprot | Q9FG05 | 1e-104 | GIS2_ARATH; Zinc finger protein GIS2 | ||||
TrEMBL | R0HDE3 | 1e-141 | R0HDE3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290152.1 | 1e-142 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14659 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 1e-106 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003820m |
Entrez Gene | 17882055 |
Publications ? help Back to Top | |||
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