PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003750m
Common NameCARUB_v10003750mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 136aa    MW: 15215.9 Da    PI: 4.4277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003750mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-181096195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ff+v+   +  +s+ + +p ++ e+   + + +k  +l+ + g+ W+v +  + ++g++++++GW +Fv +n+Lk+g+f++F +dg ++    v+
  Carubv10003750m 10 FFSVF--LSQYSSDSFLIPSSYYEHL--PRRLPKNAILMGTGGKIWKVAM--KSQRGQVYFEEGWANFVADNELKDGEFLTFVFDGYNRY--EVS 96
                     66666..556667779*******555..4568889***************..99****************************98874433..555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.63E-217103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-208102IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-19898No hitNo description
PROSITE profilePS5086313.8178101IPR003340B3 DNA binding domain
SMARTSM010192.9E-1610101IPR003340B3 DNA binding domain
PfamPF023621.5E-151089IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MASGDVLPRF FSVFLSQYSS DSFLIPSSYY EHLPRRLPKN AILMGTGGKI WKVAMKSQRG  60
QVYFEEGWAN FVADNELKDG EFLTFVFDGY NRYEVSIYGH GGCKETRAAI EVEDISDDET  120
ESDNSGESFV SVTHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-19910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003750m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290106.14e-97B3 domain-containing protein At3g06220
RefseqXP_023637451.14e-97B3 domain-containing protein At3g06220
SwissprotQ1PES72e-67Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLR0H1D49e-96R0H1D4_9BRAS; Uncharacterized protein
STRINGXP_006290106.11e-96(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.18e-70B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]