PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003685m | ||||||||
Common Name | CARUB_v10003685mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 20103.2 Da PI: 6.2713 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 2e-05 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k+F + L H++ H Carubv10003685m 27 YKCKYCPKRFDKSQALGGHQNAH 49 9******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.87E-7 | 24 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-5 | 26 | 53 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.071 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MFSSGLSDGS EISDDGSSTG SLENQKYKCK YCPKRFDKSQ ALGGHQNAHR KERELTKKRN 60 LGQLNQSGLD LYRSSFSYPY KFPKEYALPP GFEEPRYKAD RLENQTMMNE YDKYAESLGS 120 NFVGQSQPQP LFSPSSPLSL DLCLGTGKPQ TQPIETTNAA DEMVGENEND GSPLSHSLKR 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003685m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290051.1 | 1e-130 | zinc finger protein KNUCKLES | ||||
TrEMBL | R0H166 | 1e-129 | R0H166_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290051.1 | 1e-130 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15741 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 3e-42 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003685m |
Entrez Gene | 17882697 |