PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003677m
Common NameCARUB_v10003677mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 307aa    MW: 35283.6 Da    PI: 10.1845
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003677mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-1719110196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffk+l ++  +++ +  +p +f++++++k + s +++l+ ++g sW +++  +++++  ++ +kGW +F ++n L   +f++F+++g+++f   
  Carubv10003677m  19 FFKILRRATLSSETMRGIPLNFIRSISEK-QLSAKMVLKVSWGSSWAIRI--SRNPRFyFMEKKGWDQFLSDNSLGNDEFLTFTHKGNMCF--A 107
                      8999999999999999**********655.6899****************..****99555569***********************9999..6 PP

                      EEE CS
               B3  94 vkv 96 
                      v +
  Carubv10003677m 108 VDI 110
                      665 PP
2B334.24.6e-112253021698
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      l +pk f e h+ +k  +++ ++ d++g +sW+v +  + ++ +  +++GW + +k+  L +gD+++F+l++   +e++vkv r
  Carubv10003677m 225 LGIPKLFEELHM-PK-VTTMFKIHDPEGeNSWNVMF--KITGVQSRFSAGWIRLAKDLSLVVGDVCTFTLIK--PTEMLVKVSR 302
                      679999987775.33.34589999*8888*******..566666669**********************987..6777998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1713113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1714117IPR015300DNA-binding pseudobarrel domain
CDDcd100177.34E-1517111No hitNo description
PROSITE profilePS5086312.78819114IPR003340B3 DNA binding domain
PfamPF023621.8E-1519110IPR003340B3 DNA binding domain
SMARTSM010192.1E-1919114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898210304IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17210302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-14211302IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-13211298No hitNo description
SMARTSM010192.7E-13213304IPR003340B3 DNA binding domain
PfamPF023621.1E-7224301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVKNRAFGEI MDDGDKPGFF KILRRATLSS ETMRGIPLNF IRSISEKQLS AKMVLKVSWG  60
SSWAIRISRN PRFYFMEKKG WDQFLSDNSL GNDEFLTFTH KGNMCFAVDI YQIDGKELLR  120
QRRSATTVAS SSGRNKREQR KNIYKHVKRE EVESWSESSY PGHESAESIG RRQKLSSKTR  180
EAEETEKSKK KKMKVDNICD DSEDDTMSLV PEFSITIKKS YLIFLGIPKL FEELHMPKVT  240
TMFKIHDPEG ENSWNVMFKI TGVQSRFSAG WIRLAKDLSL VVGDVCTFTL IKPTEMLVKV  300
SRFKTP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003677m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290043.10.0B3 domain-containing protein At5g18090
SwissprotQ9FK611e-164Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLR0FLU30.0R0FLU3_9BRAS; Uncharacterized protein
STRINGXP_006290043.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-165B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]