PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003631m | ||||||||
Common Name | CARUB_v10003631mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 267aa MW: 28513 Da PI: 8.5042 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.2 | 1.7e-32 | 53 | 109 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+YkeClkNhAa +Ggha+DGCgEfmps+ + +++++l+CaACgCHRnFHRre + Carubv10003631m 53 VVTYKECLKNHAAGIGGHALDGCGEFMPSPAFNsNDPTTLTCAACGCHRNFHRREDD 109 689***************************999889******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-28 | 47 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.0E-27 | 54 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-31 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.926 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.43E-18 | 164 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 166 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.8E-24 | 177 | 233 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MDVIATTTTI VSDLDSRQPE IEAPTRIHPA KPISFSNGKR CHHNHLASEA AAVVTYKECL 60 KNHAAGIGGH ALDGCGEFMP SPAFNSNDPT TLTCAACGCH RNFHRREDDP SLASAIVPAI 120 EFRPQNRHQL PPPHPVGIRS PDDDDSASPP PISSSYMLLA LSGGGGGGGN TAGPMSRKRF 180 RTKFSQYQKE KMFEFAERVG WRMPKADDVA VKDFCREIGV DKSVFKVWMH NNKISGRGGA 240 KRANGGGGGG DSRESVVPTN GSFSST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-23 | 176 | 236 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003631m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL353993 | 0.0 | AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project). | |||
GenBank | BT012195 | 0.0 | BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290001.1 | 0.0 | zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9LXG0 | 1e-161 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | R0H107 | 0.0 | R0H107_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290001.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-145 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003631m |
Entrez Gene | 17883552 |
Publications ? help Back to Top | |||
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