PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003464m | ||||||||
Common Name | CARUB_v10003464mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 174aa MW: 20146.9 Da PI: 9.8424 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.2e-18 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eql Le F+++ +++ +++ +L+k+lgL rq vWFqNrRa++k Carubv10003464m 35 KKKKRLTSEQLASLEVSFQEDIKLDSDRKLKLSKELGLHPRQTAVWFQNRRARWK 89 78889*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.4 | 2.9e-36 | 35 | 123 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq+++LE sF+e+ kL+++rK +l++eLgl+prq avWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++ev++Lr+ Carubv10003464m 35 KKKKRLTSEQLASLEVSFQEDIKLDSDRKLKLSKELGLHPRQTAVWFQNRRARWKVKHLEESYDSLRQEYDAVWREKQMLHDEVKRLRA 123 59*************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.48E-17 | 25 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.261 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-17 | 34 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-15 | 35 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.58E-14 | 35 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 37 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF02183 | 4.6E-7 | 93 | 123 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
NSYTQTGPVI AVPESEKMIN TYQCDPSNNN EMINKKKKRL TSEQLASLEV SFQEDIKLDS 60 DRKLKLSKEL GLHPRQTAVW FQNRRARWKV KHLEESYDSL RQEYDAVWRE KQMLHDEVKR 120 LRAIILRDQG LMMNSNQIAR GDQANGIGGY INPMMVGSSH VRWPPISQPP NPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003464m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM214232 | 0.0 | KM214232.1 Capsella rubella isolate C.r1504 RCO-A (RCO-A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289854.2 | 1e-126 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 3e-67 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | R0FJX2 | 1e-126 | R0FJX2_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006289854.1 | 1e-127 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-58 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003464m |
Entrez Gene | 17882125 |
Publications ? help Back to Top | |||
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