PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003458m
Common NameCARUB_v10003458mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 372aa    MW: 40647 Da    PI: 7.888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003458mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044158180123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Carubv10003458m 158 YQCKTCDRTFPSFQALGGHRASH 180
                      9***********99999998887 PP
2zf-C2H213.10.00029236258123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Carubv10003458m 236 HECGICGAEFTSGQALGGHMRRH 258
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-9157180No hitNo description
PfamPF139122.2E-12157182IPR007087Zinc finger, C2H2
SMARTSM003550.028158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471158185IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SuperFamilySSF576675.26E-9231258No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4234260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11235260IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93236260IPR007087Zinc finger, C2H2
SMARTSM003550.047236258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEAFQEATKE QSLILKGKRT KRQRPQSPIP FSMISPPIVS SPARDMDGEF TYLDSKDNAI  60
GGNDEVNHKK DGLITSSSSS ASWSSHNDTT LKAAEDEEDQ DIANCLILLA QGHFLPHSNQ  120
HLTNSNNNSN TAAYRFTSRR FLETSSSNGG GKAGYYVYQC KTCDRTFPSF QALGGHRASH  180
KKPKATSFYS NLDIKKNVYA NDAASLVTTT TVYNNNKNNN NRSLVVYGKA SNNKVHECGI  240
CGAEFTSGQA LGGHMRRHRG AVVVAATVAP TVTVATAAAN TELSLSSMSF DQISDGQDNL  300
VMPERKKARK TVVSLDLDLN LPAPEDENRV NNGYSFASKQ NQEQEEQQMK QREEPKSLVL  360
SAPPTLVDCH Y*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003458m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289848.10.0zinc finger protein ZAT5
TrEMBLR0FL910.0R0FL91_9BRAS; Uncharacterized protein
STRINGXP_006289848.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-169C2H2 family protein