PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003421m
Common NameCARUB_v10003421mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 644aa    MW: 72544.1 Da    PI: 6.0178
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003421mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.42.8e-22228281155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+++ Wt  LH+ F++a++++ G +kA+Pk+il +m+v+ Lt+e+v+SHLQkYR+
  Carubv10003421m 228 KAKITWTDGLHDLFLQAIRHI-GLDKAVPKKILAFMNVPYLTRENVASHLQKYRI 281
                      6799*****************.********************************6 PP
2Response_reg67.46.2e-23181321109
                      EEEESSSHHHHHHHHHHHHHTTC....EEEEEESSHH..HHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegy....eevaeaddge..ealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                      +++vdD+p++++++ ++lek++y    +++++ ++g+  +al +l  +++++Dli++D  mp+m+G++l ++i+ee  +lp+iv++a ++    
  Carubv10003421m  18 IMVVDDDPVFLNVISRMLEKSKYrdpvMDIRVIAEGDpiKALSTLklQRNNIDLIITDYYMPDMNGIQLKEQITEEFGNLPVIVMSADAN--KE 109
                      89*****************88885555556655544422666666345555***********************************9887..66 PP

                      HHHHHTTESEEEESS--HHHHHH CS
     Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                      +e l  Ga +fl Kp++p +l k
  Carubv10003421m 110 QESLTCGALGFLPKPIKPIDLPK 132
                      89****************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-2615141No hitNo description
SMARTSM004483.0E-2016134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.99E-2516140IPR011006CheY-like superfamily
PROSITE profilePS5011034.39517138IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-2018133IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.01E-2419130No hitNo description
Gene3DG3DSA:1.10.10.606.7E-23226285IPR009057Homeodomain-like
SuperFamilySSF466893.4E-17226285IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-25228281IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAFVESFHNQ SSVLRINIMV VDDDPVFLNV ISRMLEKSKY RDPVMDIRVI AEGDPIKALS  60
TLKLQRNNID LIITDYYMPD MNGIQLKEQI TEEFGNLPVI VMSADANKEQ ESLTCGALGF  120
LPKPIKPIDL PKIYQLALTY KTNGKSTICT EPNPKDTCVS VPEQIEMLPE QVNLLNTQKK  180
WPSKSDSRSM NSTHGSRASI DGSRKNRKRK PTDGPSANGE YPSQPSKKAK ITWTDGLHDL  240
FLQAIRHIGL DKAVPKKILA FMNVPYLTRE NVASHLQKYR IFLRKVAEQG LMSMMSSRGI  300
DSMFRYTHIK EPYFNHYTPS TSWYETSLNN RSYYSKPGHG FGQSRLLSNT REPVRFNHMS  360
YNYMNRSSTY EPHRIGSGSN LTLPTQSNLG LSNQPSQNGE KISFFEPPVM ANKIGQTSQV  420
LGFGQLGPSA ISGNSFNNNM MSSFGSFTPN QQGLGHFSYG MQSLLNNEST ACNNQPHADA  480
TAQPHPELHQ LENLNLSSDL HSANELPYNI NNFIFDHNKQ QHVREEDSAK FDLSANFSAE  540
LNHILSLEED GDWTFWNVNQ NHSTGEIANT FDALETNHTL TAVEMNHTFA TPETNPPTFT  600
TNPNHQSQEQ DVVNHDITDL SLLDSQELVD EDFMNTLFND DMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18227287464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003421m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289816.10.0putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLR0H0F30.0R0H0F3_9BRAS; Uncharacterized protein
STRINGXP_006289816.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21