PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003379m
Common NameCARUB_v10003379mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 129aa    MW: 14998.7 Da    PI: 10.1395
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003379mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-1114103383
                      EE-..-HHHHTT-EE--HHH.HTT........---.....--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkke...esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+ltp dv ++grl lp++ +  +        +   +   ++++l + d ++++s++v l+ r++s+ y+l+ GW +  k+ gLk gD + ++
  Carubv10003379m  14 KTLTPTDVDQHGRLLLPRSQILLIfkkmkditK---KsllKGIQLEVLDiTQNNSYSVFLKSRNSSKDYFLGMGWTKLRKSLGLKKGDNIKLY 103
                      99******************8777777765543...14458889999997788*******99**************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-1310105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-1510106IPR015300DNA-binding pseudobarrel domain
CDDcd100175.10E-1311116No hitNo description
SMARTSM010196.4E-912117IPR003340B3 DNA binding domain
PfamPF023622.8E-814104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEDFRIDGDM IISKTLTPTD VDQHGRLLLP RSQILLIFKK MKDITKKSLL KGIQLEVLDI  60
TQNNSYSVFL KSRNSSKDYF LGMGWTKLRK SLGLKKGDNI KLYWDYLNYK FIILNFEYSL  120
IPEFPLKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003379m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296022.15e-57putative B3 domain-containing protein At2g21920
SwissprotQ9SJ074e-55Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0HCB37e-86R0HCB3_9BRAS; Uncharacterized protein
STRINGXP_006289777.11e-86(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.12e-19B3 family protein