PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003360m
Common NameCARUB_v10003360mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family DBB
Protein Properties Length: 152aa    MW: 16566.6 Da    PI: 5.2059
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003360mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.67.8e-06445539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                      C+ +e+ e++  C +++  lC+ C  + H+        H+v
  Carubv10003360m  4 QCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnkifqrhHRV 45
                     7*****************************767888884444 PP
2zf-B_box30.57.3e-106299338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
                     ++ C+ ++e +  +fC +++ llC+dC +++H  ++H+
  Carubv10003360m 62 PPLCDICQERKGYFFCLEDRALLCNDCDVAIHtcNSHQ 99
                     579******99********************9434487 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
CDDcd000211.43E-4347No hitNo description
SMARTSM003361.8E-5447IPR000315B-box-type zinc finger
SMARTSM003365.5E-1360103IPR000315B-box-type zinc finger
CDDcd000217.50E-863103No hitNo description
PfamPF006431.4E-76399IPR000315B-box-type zinc finger
PROSITE profilePS501199.07264103IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKIFQ RHHRVALQKD AAVSATTSSG  60
APPLCDICQE RKGYFFCLED RALLCNDCDV AIHTCNSHQR FLLSGVQVSD QSLSTEVSGC  120
STSFSSETYQ IHSSEETEAG NSGKTHTMIF P*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003360m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545741e-138AC254574.1 Capsella rubella clone JGIBSIA-41H23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289760.21e-95B-box zinc finger protein 23
SwissprotO826171e-80BBX23_ARATH; B-box zinc finger protein 23
TrEMBLR0HFU61e-107R0HFU6_9BRAS; Uncharacterized protein
STRINGXP_006289760.11e-108(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.15e-83DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]