PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003217m
Common NameCARUB_v10003217mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 382aa    MW: 43155.4 Da    PI: 7.1523
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003217mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31197251155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt++LHe+Fve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Carubv10003217m 197 KTRIRWTQDLHEKFVECVNCLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 251
                      68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.068194254IPR017930Myb domain
SuperFamilySSF466891.49E-17194251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-28196252IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-23197252IPR006447Myb domain, plants
PfamPF002493.1E-7201250IPR001005SANT/Myb domain
PfamPF143794.5E-20281328IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDNINFEFSN ASQGSQLQSQ PQPQPPQPFN LQNLNNMIQY NQPSSPWTRA ETFSEFPPYD  60
CTANQSFPLQ CSSSKPYPSS FHPYHHLSPD HTSLDQTLSM VPMPPLPDQY LKPSLYQRSC  120
ANDFAAANNA SSASYSLSFE ASQDPQELCR RTYSNSNVTH LNFSSSHQQL KQTPSKFSSH  180
TSFSTHGGSV APNCVNKTRI RWTQDLHEKF VECVNCLGGA DKATPKAILK LMDSDGLTIF  240
HVKSHLQKYR IAKYMPETQE GKFEKRACGK ELSQLDTKTG VQIKEALQLQ LDVQRHLHEQ  300
LEIQRNLQLR IEEQGKQLKI MMEQQQKTKE SLMKTPEVEV SLSLPASDRT RPPPPFLVQD  360
DTEALQMLTS YGDNQVQSKI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003217m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289659.10.0myb family transcription factor PHL5
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLR0FJG70.0R0FJG7_9BRAS; Uncharacterized protein
STRINGXP_006289659.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-176G2-like family protein