PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003130m | ||||||||
Common Name | CARUB_v10003130mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 270aa MW: 29969.7 Da PI: 6.9776 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97 | 1.4e-30 | 81 | 134 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Carubv10003130m 81 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 134 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.059 | 78 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-20 | 78 | 138 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-31 | 80 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 82 | 134 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-8 | 84 | 133 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MREEDSNWFS KWEEELPSPE ELIPLSQSLI TPDLAIAFDL HRRNTENSPQ TLPQTTLPQP 60 NSSAEFAGDS NGDEPARTLK RPRLVWTPQL HKRFVDAVAH LGIKNAVPKT IMQLMSVDGL 120 TRENVASHLQ KYRLYLKRMQ SGGGGSGVGG TVGESDHLFA SSPVPPHFLL PTSRQSSDHF 180 IPSFVPISTQ HPAAHLQQPS QFLHRQISAA NFTSPTKATD QAMFLARQSQ QQPVFRPASL 240 HVHSQVANYT QDLELEAKTV LTLFPTRDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 9e-32 | 81 | 137 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00056 | PBM | Transfer from AT5G05090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003130m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289575.1 | 0.0 | transcription factor MYBC1 | ||||
Swissprot | O22210 | 5e-56 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | R0HFE3 | 0.0 | R0HFE3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289575.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 1e-134 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003130m |
Entrez Gene | 17884025 |
Publications ? help Back to Top | |||
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