PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003097m
Common NameCARUB_v10003097mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 92aa    MW: 10698.5 Da    PI: 10.632
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003097mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.23.7e-331568255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Carubv10003097m 15 PRLRWNSDLHNSFVQAVEQLGGENRATPKMVLQLMDVKGLTISHVKSHLQMYRS 68
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-311169IPR009057Homeodomain-like
PROSITE profilePS5129410.3051171IPR017930Myb domain
SuperFamilySSF466892.15E-151368IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-241569IPR006447Myb domain, plants
PfamPF002494.4E-71667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MKTPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VKGLTISHVK  60
SHLQMYRSMK LEESMQGRYH FTSSKYLCIN W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-201670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-201670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-201670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-201670357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-201670458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003097m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0740214e-36AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBankAL1615014e-36AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBankCP0026874e-36CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289552.23e-49transcription repressor KAN1 isoform X1
SwissprotQ700D94e-27MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLR0HBQ04e-62R0HBQ0_9BRAS; Uncharacterized protein
STRINGXP_006289552.17e-63(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.13e-31G2-like family protein