PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003065m | ||||||||
Common Name | CARUB_v10003065mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 126aa MW: 14098.5 Da PI: 11.0896 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 5e-19 | 29 | 63 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+ttkTp+WR gp g+k+LCnaCG+++rk+++ Carubv10003065m 29 CNDCKTTKTPMWRGGPTGPKSLCNACGIRFRKQRR 63 99******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.52E-13 | 21 | 64 | No hit | No description |
SMART | SM00401 | 1.0E-15 | 23 | 83 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.242 | 23 | 59 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.9E-15 | 27 | 63 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.9E-17 | 29 | 63 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.99E-10 | 29 | 63 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 29 | 54 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MDPRVQIRSR SSTYVSGRME EEKKITRCCN DCKTTKTPMW RGGPTGPKSL CNACGIRFRK 60 QRRSELLGIH IIHRHKTLNS KKLNPKTSSL SSHGGVAVKK RRRSLKEEEQ AALCLLLLSC 120 SSVFA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003065m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289523.1 | 3e-87 | GATA transcription factor 23 | ||||
Swissprot | Q8LC59 | 5e-49 | GAT23_ARATH; GATA transcription factor 23 | ||||
TrEMBL | R0FJX9 | 6e-86 | R0FJX9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289523.1 | 1e-86 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14484 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 9e-52 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003065m |
Entrez Gene | 17883926 |
Publications ? help Back to Top | |||
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