PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10002996m

Common Name

CARUB_v10002996mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HB-other

Protein Properties

Length: 514aa MW: 57506.7 Da PI: 7.2923

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10002996m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.4e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yp++e++ +LA+++gLte+qV+ WF+ rR k+k+ Carubv10002996m 21 KKRKLKTPIQVMALENFYNEHKYPTEEMKGKLAEEIGLTEKQVSGWFCHRRLKDKR 76 8999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-20	4	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	15	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	17	77	IPR001356	Homeobox domain
SMART	SM00389	8.7E-19	19	81	IPR001356	Homeobox domain
CDD	cd00086	5.87E-17	21	77	No hit	No description
Pfam	PF00046	1.6E-15	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MHSDSGEAPT DGDKVSAENS KKRKLKTPIQ VMALENFYNE HKYPTEEMKG KLAEEIGLTE 60 KQVSGWFCHR RLKDKRSVKE DGNTIGSQDR SSVVLQDRGS GLRQDSCGST KQTDYWNPKP 120 REVESQRLYG GSYMGNVDGE DSTSSERSSS LHKNLVSIKD GIRDVESSRY FTHNDVIAHP 180 QVMRSYGYNK PSGYLKVKRE SENGAITAVK RQLGRQYQED GPPLGVEFDP LPPGAFEPQT 240 NAIVQEPIYV GNQRRPHPPH LLGIRKSFNP GPSYELTRKL KMHSPDPDPD SEEEEEDDDD 300 DNMMIGMEPG LRDRKNLGEP RLKSPSPCFY NTAPNHKTFK ETFKGSPRKI PLTISKKGRI 360 SSKSWAEGSR SNLIANFRNL PGSNIETNQT HNYDNKIFNG GHKTGYLSKS SKLLPPSRSR 420 SPDSIDGGPS SVMAEKYHDE RNQTKMHREM LHSTDEPPVS VMVTKQVKHG YLQQASAYSE 480 ILERQGQINR SGVELASSLS GDDETDESSS SMD*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MHSDSGEAPT DGDKVSAENS KKRKLKTPIQ VMALENFYNE HKYPTEEMKG KLAEEIGLTE  60
KQVSGWFCHR RLKDKRSVKE DGNTIGSQDR SSVVLQDRGS GLRQDSCGST KQTDYWNPKP  120
REVESQRLYG GSYMGNVDGE DSTSSERSSS LHKNLVSIKD GIRDVESSRY FTHNDVIAHP  180
QVMRSYGYNK PSGYLKVKRE SENGAITAVK RQLGRQYQED GPPLGVEFDP LPPGAFEPQT  240
NAIVQEPIYV GNQRRPHPPH LLGIRKSFNP GPSYELTRKL KMHSPDPDPD SEEEEEDDDD  300
DNMMIGMEPG LRDRKNLGEP RLKSPSPCFY NTAPNHKTFK ETFKGSPRKI PLTISKKGRI  360
SSKSWAEGSR SNLIANFRNL PGSNIETNQT HNYDNKIFNG GHKTGYLSKS SKLLPPSRSR  420
SPDSIDGGPS SVMAEKYHDE RNQTKMHREM LHSTDEPPVS VMVTKQVKHG YLQQASAYSE  480
ILERQGQINR SGVELASSLS GDDETDESSS SMD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10002996m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006289467.1	0.0	uncharacterized protein LOC17884132 isoform X1
TrEMBL	R0HBG1	0.0	R0HBG1_9BRAS; Uncharacterized protein
STRING	XP_006289467.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Carubv10002996m
Entrez Gene	17884132