PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002921m | ||||||||
Common Name | CARUB_v10002921mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 21082.4 Da PI: 6.15 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.8 | 1.3e-36 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+ dCv++pyf eq +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA r+rdPvyG+v++i++l+qq+ +l++e Carubv10002921m 8 SCGACKFLRRKCTCDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLQLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVVSLQEE 101 6***********************9978****************************************************************** PP DUF260 94 lallkee 100 ++ l+++ Carubv10002921m 102 IEFLGSQ 108 *998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.101 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-34 | 8 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAGHGSSSCG ACKFLRRKCT CDCVFSPYFS YEQASSHFAA VHKVFGASNV SKHLLQLPLH 60 QRSVAAITIS YEALSRMRDP VYGCVAHIFA LHQQVVSLQE EIEFLGSQMT NLSYSNQNGS 120 HLNTNVPEFV NQVTTVDTTN FVDEISVWNN HDDGRNCVDG FFMNSDEMVV NHTWLQNTDY 180 YYYASQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-33 | 5 | 127 | 8 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-33 | 5 | 127 | 8 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002921m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289422.1 | 1e-140 | LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 1e-106 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | R0HBB9 | 1e-139 | R0HBB9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289422.1 | 1e-139 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-109 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002921m |
Entrez Gene | 17881591 |
Publications ? help Back to Top | |||
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