PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10002897m

Common Name

CARUB_v10002897mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 279aa MW: 31157.1 Da PI: 7.116

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10002897m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k Fs++ L H++ H Carubv10002897m 82 YACHFCKKGFSTSQALGGHQNAH 104 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.18E-7	78	109	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.0E-5	80	108	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.78	82	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MENQATSSSS SSTPKPEKLK SILVVMEESK ERETRDTNLK LGSPQEEVTS EKRMENPCFG 60 SGPVRRGREI MKLYPSKSNK VYACHFCKKG FSTSQALGGH QNAHKQEREW DKKRKEMEAD 120 FPGLAFLNPY LDKPHLLLGG YSQDALSNEN HLGITLDPFK RLVYPSFNGG VTGGIADMNM 180 AVVPRVTPTR FFPGNSSTNG FASMFPNPPL PKRHCPLTSR NVFPFSPPQT TNLSRDVVPQ 240 ENVLRERDFI SLIGRNNVVE IDDDEPQEEN DIDLTLSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10002897m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006289398.1	0.0	uncharacterized protein LOC17881961
TrEMBL	R0FJL2	0.0	R0FJL2_9BRAS; Uncharacterized protein
STRING	XP_006289398.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	1e-135	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Carubv10002897m
Entrez Gene	17881961