PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002831m | ||||||||
Common Name | CARUB_v10002831mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 167aa MW: 19607 Da PI: 6.5322 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.8e-18 | 86 | 137 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +eql Le F+++ +++e++ +LA++lgL+ rqV vWFqNrRa++k Carubv10002831m 86 KRLASEQLASLELRFQEDFRLDTERKFKLAEELGLEPRQVAVWFQNRRARWK 137 56889**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 104.1 | 1.1e-33 | 83 | 165 | 1 | 83 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +k +rl++eq+++LE F+e+ +L++erK +la+eLgl+prqvavWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++e Carubv10002831m 83 RKNKRLASEQLASLELRFQEDFRLDTERKFKLAEELGLEPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDAVWREKQMLHDE 165 589*****************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-18 | 72 | 138 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 77 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 82 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-13 | 83 | 140 | No hit | No description |
Pfam | PF00046 | 1.9E-15 | 85 | 137 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.0E-5 | 110 | 119 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 119 | 135 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MEWSMTNNVQ NKRADSLPQP QPWLESNYSN SLCSVNYNPY AGNSSCNKPA YTQTGPVISI 60 PESEKIIFKA YQCDPGNNNE MIRKNKRLAS EQLASLELRF QEDFRLDTER KFKLAEELGL 120 EPRQVAVWFQ NRRARWKVKH LEESYDSLRQ EYDAVWREKQ MLHDEV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002831m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM214233 | 2e-95 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. | |||
GenBank | KM214234 | 2e-95 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289347.2 | 1e-122 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 8e-68 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | R0HB51 | 1e-121 | R0HB51_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289347.1 | 1e-121 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-70 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002831m |
Entrez Gene | 17884511 |
Publications ? help Back to Top | |||
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