PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002800m
Common NameCARUB_v10002800mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 326aa    MW: 37793.9 Da    PI: 8.9136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002800mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05233256123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+Cp+C+ +F ++  +  H+++ H
  Carubv10002800m 233 YTCPKCNNVFDTSQKFAAHMSSvH 256
                      9********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-5231259No hitNo description
SMARTSM003550.0045233256IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806233261IPR007087Zinc finger, C2H2
PROSITE patternPS000280235256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNSFPNGLNS YGDDTMNNRR FTPIEMNSNF RNYESKMVES RFITSGHTNH HGLFSSSSLS  60
SSSFGLNNPQ VAYQMRQNMV SRFEMPCITQ VPNNPHLSQI SVTQTITNRY SAIIPTHNLV  120
TSQNAYRRAM NHNIFNSSFY PTNFVEKQCE ILNPTPLRTV FPHQTSVYPR QPNRFSFSPE  180
HHHDQHVSNR RPVKKRCRST RYFEENFEGF DSEESGEYDG RTHSLPYKKY GPYTCPKCNN  240
VFDTSQKFAA HMSSVHYKNE TIDEKFKRYK ARNKKRLCKT NQMSHEESHN IQPEERVVEQ  300
GGGNDNTASD PEAFQHHMIV KEEPV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002800m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289316.10.0uncharacterized protein LOC17881949
TrEMBLR0GZ560.0R0GZ56_9BRAS; Uncharacterized protein
STRINGXP_006289316.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-142C2H2-like zinc finger protein