PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002574m | ||||||||
Common Name | CARUB_v10002574mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 725aa MW: 81400.2 Da PI: 6.641 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.7e-20 | 25 | 80 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ +++t++q+++Le++F+++++p+ +r++L+++l+L+ +q+k+WFqN+R++ k Carubv10002574m 25 KRNYHRHTSHQIQRLEAYFKECPHPDDLQRRQLSEELNLKPKQIKFWFQNKRTQAK 80 688999***********************************************988 PP | |||||||
2 | START | 104.4 | 1.9e-33 | 241 | 464 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.......EE CS START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla.......ka 79 +ae+a +e++++++ ee +W+kss + +n++++ k+ kv + e +++++vv m++ lv +ld+ +W + ++ + Carubv10002574m 241 MAEKAVAEVMTLIQIEESMWKKSSidgrlviDPSNYEKCFAKINHFKVpsGRPESSKEVVVVQMDARILVDMFLDTE-KWARLFPtivneskTI 333 68999**************************************777777767788************9999999999.****999999966666 PP EEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 80 etlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +l+ +++g + +++ ++ lsplvp R+f ++R+++q+++ +w+i+dvS + ++ +s v ++++pSg li+ +++g skvtwvehv Carubv10002574m 334 YVLDSVDQGrkIFSRVIYEQMHILSPLVPaREFIILRSCQQMEENVWMIADVSCNIPNVEF-ESTVPLCNKRPSGVLIQALPDGFSKVTWVEHV 426 6666667778755567788888888****************************99998877.899***************************** PP E--SSX.XHHHHHHH.HHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrl.phwllrsl.vksglaegaktwvatlqrqcek 206 ++ +++ ph l+r l + gl ga++w+ l+r ce+ Carubv10002574m 427 EVTDKMrPHRLYRDLfLYGGLGYGARRWTVILERMCER 464 **999845*****97257789***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-18 | 8 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-20 | 9 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-18 | 24 | 86 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.4E-17 | 25 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.13E-18 | 25 | 83 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.266 | 231 | 467 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.26E-26 | 232 | 435 | No hit | No description |
CDD | cd08875 | 7.52E-83 | 237 | 463 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 6.3E-9 | 240 | 427 | IPR023393 | START-like domain |
SMART | SM00234 | 1.8E-19 | 240 | 464 | IPR002913 | START domain |
Pfam | PF01852 | 4.0E-28 | 241 | 464 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.76E-7 | 519 | 696 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MDSSRDDSSS DERGTSPDTN NNHDKRNYHR HTSHQIQRLE AYFKECPHPD DLQRRQLSEE 60 LNLKPKQIKF WFQNKRTQAK SHSEKADNAA LRADNMKIRR ENEAMEEALN NAVCPPCSGR 120 GFGSAEKLRH IQKLRAENTL LKKEYERLSS YIAQHGGHPL PSVDAFTSLH GPSTYGSTST 180 NRRASYGSSS NHLHQPSSSS LRGPYSRENI SMTAPPQSPK QLPLHHFPPL SQMDRMVMFE 240 MAEKAVAEVM TLIQIEESMW KKSSIDGRLV IDPSNYEKCF AKINHFKVPS GRPESSKEVV 300 VVQMDARILV DMFLDTEKWA RLFPTIVNES KTIYVLDSVD QGRKIFSRVI YEQMHILSPL 360 VPAREFIILR SCQQMEENVW MIADVSCNIP NVEFESTVPL CNKRPSGVLI QALPDGFSKV 420 TWVEHVEVTD KMRPHRLYRD LFLYGGLGYG ARRWTVILER MCERLYLSSV SDLSNDDYAG 480 VVQTMEGRRS VMSLGERMSK NFAWMINMVQ KLDFSQQSET NNSGVRISVR TNDAAGEPPG 540 LIVCAGSSLS LPLPPLQVYD FLRNLEVRHQ WDVLCQGNPV TEVARFITGT DTKNNVNFLE 600 PSSGGEKKNE LMILQDSFID ALGGMVVYAP MDLETAASAI SGQIDSSTIP ILPSGFIISC 660 DGRPLSADEQ DGGSSSTLLT VAFQILVSDP RYSTNINIEE SATTVNTLIS STVQRIKSML 720 NCES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002574m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 1e-84 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F21H2 | 1e-84 | AC007894.2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286655.1 | 0.0 | homeobox-leucine zipper protein HDG9 | ||||
Swissprot | Q9FFI0 | 0.0 | HDG9_ARATH; Homeobox-leucine zipper protein HDG9 | ||||
TrEMBL | R0H7P3 | 0.0 | R0H7P3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286655.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8468 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17320.1 | 0.0 | homeodomain GLABROUS 9 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002574m |
Entrez Gene | 17881103 |
Publications ? help Back to Top | |||
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