PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002440m | ||||||||
Common Name | CARUB_v10002440mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27070.6 Da PI: 8.886 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 80 | 132 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Carubv10002440m 80 KKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWK 132 55699***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117 | 1.1e-37 | 79 | 169 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+ee kL+++rKv+l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yda+++e+++L++ev++Lr+ l+ Carubv10002440m 79 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDAVSREKQMLHEEVKKLRAILR 169 9**************************************************************************************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.15E-18 | 68 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.892 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-16 | 77 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.05E-15 | 79 | 135 | No hit | No description |
Pfam | PF00046 | 4.4E-16 | 80 | 132 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-19 | 81 | 141 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.2E-5 | 105 | 114 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.2E-5 | 114 | 130 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.9E-7 | 134 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFSFDPYAG NLYTPPADTQ TGPVISVPEP 60 EKIMNAYRFP NSNNNEMMKK KRLTSGQLAS LERSFQEEIK LDSDRKVKLS RELGLQPRQI 120 AVWFQNRRAR WKAKQLEQLY DSLRQEYDAV SREKQMLHEE VKKLRAILRE QGLSKKPLSA 180 GTIKACSEED TEELPSVVVA HPRTENLNTG VNQVYRIDQY NNPMMVAASS GWSSYP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002440m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU352029 | 1e-151 | EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289048.1 | 1e-176 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-146 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | R0FIS6 | 1e-175 | R0FIS6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289048.1 | 1e-176 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-138 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002440m |
Entrez Gene | 17881884 |
Publications ? help Back to Top | |||
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