PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002425m | ||||||||
Common Name | CARUB_v10002425mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33800.4 Da PI: 6.9902 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 33 | 83 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++GVr++ +g+WvAeIr+p + r +r +lg+f t eAaka+++a+kkl+g+ Carubv10002425m 33 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAKAYDEAAKKLYGH 83 69****999.**********8...3.35*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.64E-28 | 32 | 88 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-19 | 33 | 89 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-33 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.547 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-28 | 33 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 34 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPNRGTRLWL 60 GTFNTSVEAA KAYDEAAKKL YGHEAKLNLL HPQQQQQQQQ QQQVVNRNLS FSGHGSGSWS 120 YKLDTVRGLD LGLGPVSGSR SSWSGRSSFL QEDDDHHYDR CLPSSDSNLC WLLPKQSDSK 180 GQESVDAASG GGGSSLTFST TLKPRVNPNY GLSNGAWSRF LVGQEKKTEH DVSSSCGSSD 240 NKESMLVHSS GVERLHKPEV EEGTGYLEMD DLLEIDDLGL LIGKNGDFKN WCCEEFQHPW 300 NWF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-14 | 34 | 89 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 3e-14 | 34 | 91 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002425m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC051626 | 0.0 | AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence. | |||
GenBank | AY560853 | 0.0 | AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds. | |||
GenBank | BT026074 | 0.0 | BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289041.1 | 0.0 | dehydration-responsive element-binding protein 2G | ||||
Swissprot | P61827 | 1e-176 | DRE2G_ARATH; Dehydration-responsive element-binding protein 2G | ||||
TrEMBL | R0GYH0 | 0.0 | R0GYH0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289041.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9978 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 1e-139 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002425m |
Entrez Gene | 17882029 |
Publications ? help Back to Top | |||
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