PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002417m | ||||||||
Common Name | CARUB_v10002417mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 309aa MW: 35424.6 Da PI: 10.2046 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.2 | 9.5e-21 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+l ++d++++ + ++p + +++++ k +s++++l+ ++g+sW+vk+ +k++ y+ +GW++Fv++ngL e++ ++F+++ +++f + Carubv10002417m 19 FFKILRREDSSSEIMRMIPHHLIRSISD-KSSSFKMVLKVPWGNSWSVKI--SKNPVFyYMEDRGWNQFVNDNGLGENEYLTFTHEANMCF--N 107 99************************64.5799*****************..****9955555**********************999***..9 PP EEEE-S CS B3 94 vkvfrk 99 v++f++ Carubv10002417m 108 VSIFEA 113 999976 PP | |||||||
2 | B3 | 51.7 | 1.6e-16 | 229 | 306 | 15 | 97 |
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l +pkkf++ h+ + e k+ ++++++g +sWev + ++ + +++GW++ +k+ gL++gD+++Fkl++ +e++vkv Carubv10002417m 229 FLGIPKKFVDMHMPN--EAKMFKIRHPRGkKSWEVSY--VVTDVQSRFSAGWSRLAKELGLEVGDVCTFKLIK--PTEMHVKVS 306 368*********866..55689999*99989******..555555569**********************987..677899986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-20 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-20 | 16 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-19 | 17 | 111 | No hit | No description |
SMART | SM01019 | 4.9E-25 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-19 | 19 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 19 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.421 | 215 | 308 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-20 | 215 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-20 | 215 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.26E-16 | 216 | 307 | No hit | No description |
SMART | SM01019 | 1.1E-18 | 218 | 308 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-12 | 229 | 305 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVSNRAFGQL MEEGYNPAFF KILRREDSSS EIMRMIPHHL IRSISDKSSS FKMVLKVPWG 60 NSWSVKISKN PVFYYMEDRG WNQFVNDNGL GENEYLTFTH EANMCFNVSI FEANGTEMLR 120 PRKSSPVASS SGGNKREERR SIYIDVKKEE GTESCSESRY PDLKTAESTS GRSKQKQKFN 180 LRQKEAEETK KSKKSKNRKV NTVCNDFEAG TSSLVPEFKL TIKKSHLLFL GIPKKFVDMH 240 MPNEAKMFKI RHPRGKKSWE VSYVVTDVQS RFSAGWSRLA KELGLEVGDV CTFKLIKPTE 300 MHVKVSKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002417m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289033.2 | 0.0 | B3 domain-containing protein At5g18000 | ||||
Swissprot | Q9FJG2 | 1e-171 | Y5800_ARATH; B3 domain-containing protein At5g18000 | ||||
TrEMBL | R0FIQ9 | 0.0 | R0FIQ9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006289033.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 1e-171 | VERDANDI |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002417m |
Entrez Gene | 17884127 |
Publications ? help Back to Top | |||
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