PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002040m
Common NameCARUB_v10002040mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 191aa    MW: 21399.3 Da    PI: 10.1847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002040mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19555155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr++  +g+Wv+eIr+p        +r++lg+f+tae Aa+a+++a+  ++g
  Carubv10002040m  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFDTAEAAARAYDQAAVLMNG 55
                     59*****999.**********8.....334*********************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.82E-23564No hitNo description
Gene3DG3DSA:3.30.730.102.2E-32663IPR001471AP2/ERF domain
PfamPF008472.2E-11651IPR001471AP2/ERF domain
PROSITE profilePS5103222.023663IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-20664IPR016177DNA-binding domain
SMARTSM003804.6E-39669IPR001471AP2/ERF domain
PRINTSPR003672.2E-10718IPR001471AP2/ERF domain
PRINTSPR003672.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE AAARAYDQAA VLMNGQNAKT  60
NFPVIKSNGS DSSVVVNSTL RSPKSLSELL NAKLRKNCKD QTPYLTCLRL DNKSSHIGVW  120
QNRAGSKTSP NWVKLVELSD SVNARPGEDT EVHKIKKRND VVEEEDQMAM QMIEELLNWT  180
CPASGSIAHV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-176701479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002040m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288730.11e-140ethylene-responsive transcription factor SHINE 3
SwissprotQ3E9581e-122SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLR0HD351e-139R0HD35_9BRAS; Uncharacterized protein
STRINGXP_006288730.11e-140(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-107ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]