PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001989m
Common NameCARUB_v10001989mg, Cr_7580
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 205aa    MW: 23008.4 Da    PI: 4.7305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001989mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16106156255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Carubv10001989m 106 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 156
                      7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-31105165IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22106165IPR016177DNA-binding domain
CDDcd000184.56E-29106164No hitNo description
PfamPF008472.6E-11106156IPR001471AP2/ERF domain
PROSITE profilePS5103224.487106164IPR001471AP2/ERF domain
SMARTSM003808.3E-36106170IPR001471AP2/ERF domain
PRINTSPR003673.8E-13107118IPR001471AP2/ERF domain
PRINTSPR003673.8E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATIEESSDL EAMQKHLFED FLVSDGFLGD FDFDASFVSG LWCIEPQVPK QEPDSPVLDP  60
DSFVNEFLQV EAKSSPELNT SSSSTYETDQ CVKKAERFEE EVETRHYRGV RRRPWGKFAA  120
EIRDPAKKGS RIWLGTFESD VDAARAYDCA AFKLRGRKAV LNFPLDAGKY EAPANSGRKR  180
KRSDAQEELQ RTHSNSSSSS CDAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28102165164ATERF1
3gcc_A1e-28102165164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001989m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545920.0AC254592.1 Capsella rubella clone CAP08-D18, complete sequence.
GenBankAY3507130.0AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288681.11e-150ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-121EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ6V5F21e-148Q6V5F2_9BRAS; AP2 transcription factor
STRINGXP_006288681.11e-149(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-121ERF family protein
Publications ? help Back to Top
  1. Fiebig A,Kimport R,Preuss D
    Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification.
    Proc. Natl. Acad. Sci. U.S.A., 2004. 101(9): p. 3286-91
    [PMID:14970339]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]