PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001903m
Common NameCARUB_v10001903mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 225aa    MW: 25343.5 Da    PI: 4.2129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001903mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19555155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g
  Carubv10001903m  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRG 55
                     79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-12555IPR001471AP2/ERF domain
CDDcd000189.77E-28565No hitNo description
PROSITE profilePS5103221.773663IPR001471AP2/ERF domain
SMARTSM003801.5E-31669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-29664IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20664IPR016177DNA-binding domain
PRINTSPR003672.8E-9718IPR001471AP2/ERF domain
PRINTSPR003672.8E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDSAE KAARAFDAAL YCLRGPGARF  60
NFPENPPEIP GGRSLTPQQI QAVANRFASE EEILPPQQQQ QQQRHLPSPP RGDRETEEEE  120
EKIISARGEM SGGSGGAVLG QVGEDNKDNN NEGNSSNDTT SYWPFIWEDE NFVGPQNSEE  180
LGFFTDDDST NLYFPTQQLS SDFYYDGACE DDDFSHYSIN LWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-166641473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001903m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409771e-107AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898831e-107AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608661e-107AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115771e-107BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122431e-107BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026881e-107CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288608.11e-166ethylene-responsive transcription factor ERF016
SwissprotQ9C5911e-122ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLR0FHP91e-165R0FHP9_9BRAS; Uncharacterized protein
STRINGXP_006288608.11e-165(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-98ERF family protein