PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10001837m

Common Name

CARUB_v10001837mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 242aa MW: 26736.7 Da PI: 6.9555

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10001837m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.3e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ++F ++ L H++ H Carubv10001837m 71 FSCNYCQRTFYSSQALGGHQNAH 93 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.2E-4	63	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.99E-7	66	98	No hit	No description
PROSITE profile	PS50157	11.635	71	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDASVVSSST PFPYQDSLKQ SLEQSNKEDV LDNSCQEQLN NNQELNLIDC IDDTTSIIKG 60 SSTTSTEQKL FSCNYCQRTF YSSQALGGHQ NAHKRERTLA KRGQRLAASA SAFGHPYGFS 120 PLPFHGQYNN RSLGIQAHSM SHKLSSYNGF GGHYGQVNWS RLPFDQQPAI GKLPSMETFH 180 HHQMMMMAPS VISMSNNIGR SSSNIGEILE GSPALEQWRG EGGLLSTNHE EQHKLDLSLK 240 L*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10001837m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006259	1e-179	AC006259.1 Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and mapping near 60.5 cM, complete sequence.
GenBank	AK227706	1e-179	AK227706.1 Arabidopsis thaliana mRNA for ZFP3 zinc finger protein, complete cds, clone: RAFL14-29-I08.
GenBank	ATHZFPC	1e-179	L39646.1 Arabidopsis thaliana zinc finger protein (ZFP3) mRNA, complete cds.
GenBank	BT008308	1e-179	BT008308.1 Arabidopsis thaliana At5g25160 gene, complete cds.
GenBank	CP002688	1e-179	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288555.1	0.0	zinc finger protein 3
Swissprot	Q39262	1e-124	ZFP3_ARATH; Zinc finger protein 3
TrEMBL	R0HCQ8	1e-180	R0HCQ8_9BRAS; Uncharacterized protein
STRING	XP_006288555.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	1e-108	zinc finger protein 3

Link Out ? help Back to Top
Phytozome	Carubv10001837m
Entrez Gene	17882824

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Zhang A, et al. The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response. PLoS ONE, 2016. 11(12): p. e0168367 [PMID:27977750]